Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3171 340 5e-91 seq9220 174 5e-41 seq4692 104 7e-20 seq10769 77.0 1e-11 >seq3171 Length=2389652 Score = 340 bits (376), Expect = 5e-91 Identities = 415/559 (74%), Gaps = 64/559 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| || | | |||||| ||||||| ||||| ||||||||| ||| Sbjct 2009921 ACTCATTCCAATTACAGGATCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTATCTC 2009980 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 2009981 CCCGGGTCGGGGGTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTGGCCGTTT 2010040 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||| ||||||||||| ||| |||| |||||| | |||||||||| Sbjct 2010041 CTCAGGCTCCCTCTCCAAAATCGAACCCTGATT--CCGTCACCCGTGGTCACCATGGTAG 2010098 Query 182 GCCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| | ||||||| |||||||||||||||||| |||||||| | | |||| | Sbjct 2010099 G-CACGGCCACTACCATTGAAAGTTGATAGGGCAGACGTTTGAATGGGTCGTTGCCGCCA 2010157 Query 241 C-AAGGCCATGCGATTCG--TTAAGTTATTATGAATCACC-AAGGAGCC----CC----- 287 | || | |||||| || | ||||| || ||||| |||| ||| || Sbjct 2010158 CGGGGGACTTGCGATCCGCCGGAGGTTATCTAGAGTCACCAAAGGCGCCGGCACCCGCCC 2010217 Query 288 ----------------GAAGGGC-------GTTGGTTTTTTATCTAATAAATACA----- 319 || |||| ||||| |||| |||| |||||| || Sbjct 2010218 CCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCAGGCAT 2010276 Query 320 --CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 ||| ||||| ||||| | |||||||||||||||||||||||| | Sbjct 2010277 CCACCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCCCA 2010334 Query 371 GTTATCCATGTAGTA-AGG----TACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | ||| | | |||| ||| ||||||||||||||||||||| Sbjct 2010335 GTTATCCAAGTAGGAGAGGAGCAAGCAACCAAAGGAACCATAACTGATTTAATGAGCCAT 2010394 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||| ||||||||||||||| Sbjct 2010395 TCGCAGTTTCACTGTACCCGCGGTTGGTACTTAGACATGCATGGTTTAATCTTTGAGACA 2010454 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 2010455 AGCATATG-CTACTGGCAG 2010472 >seq9220 Length=42800024 Score = 174 bits (192), Expect = 5e-41 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 || ||| ||||||| ||||| ||||||||| ||||| | || |||| ||||||||||| Sbjct 16515121 AATGAGTCCTGTATTTTTATTTTTTGTCACTATCTCCCTGGGTTGGGAGTGGGTAATTTG 16515062 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 | || ||||||||||||| |||||||||||| |||||||| ||| | |||||||||| | Sbjct 16515061 CATGCTTGCTGCCTTCCTTAGATGTGGTAGCCATTTCTCAGACTCTCACTCCGGAATCAA 16515002 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 || || |||||| || |||| | | |||||||||||| ||| |||| |||||| Sbjct 16515001 ACTCTGATTCCCTGTCACCCATGGTCACCATGGTAGGCATGGTGACTATCATCAAAAGTT 16514942 Query 206 GATAGGGCAGA 216 |||| |||||| Sbjct 16514941 GATATGGCAGA 16514931 >seq4692 Length=25524837 Score = 104 bits (114), Expect = 7e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 20028603 TAATTAGCACGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTTCCTCTCTG 20028662 Query 139 GAATCGAACCCTAAT 153 |||| ||||||| || Sbjct 20028663 GAATGGAACCCTGAT 20028677 >seq10769 Length=13698745 Score = 77.0 bits (84), Expect = 1e-11 Identities = 113/153 (74%), Gaps = 9/153 (6%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||| | |||||||||| |||||| | |||| | | | || || | | | ||| Sbjct 13558288 AGCATGTGTCAGCTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 13558229 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATAC 455 | | | | | ||||||||||||||||| | ||||||| ||| || || || || Sbjct 13558228 AGGATCCACACATGATTTAATGAGCCATTTACCGTTTCACCGTACCAGCCATG--TACAC 13558171 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||| |||||||||||||||||||| ||||||| Sbjct 13558170 TTACACATGCATGGCTTAATCTTTCTGACAAGC 13558138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510227315968