Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1989 181 8e-41 seq4087 161 8e-35 seq6459 111 1e-19 seq10880 95.1 1e-14 seq1678 91.5 1e-13 >seq1989 Length=5200062 Score = 181 bits (200), Expect = 8e-41 Identities = 575/876 (66%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||||| |||||| | ||||| |||| ||||| || ||||||||||||||||||||| Sbjct 4401005 TTCCCCACCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGG 4401064 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA--GCGTTTATCGAGCG 61183 || | ||||||||| || ||||||| ||||| ||||||| | | | | | | Sbjct 4401065 ACCGCGGAGGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCGAG 4401124 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | |||| || ||||| ||| ||||||| || || || || || | Sbjct 4401125 GAGA--GAGATTTTATATCCCATGTTCTGGTTTTCTTTGTAGCAAGTGATGGCATAGTAA 4401182 Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||| || || |||| || | | || || || || || ||| | || || || |||||| Sbjct 4401183 ATGCAAACTTGGTGGAGCGATGTAGC-CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTC 4401241 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 | |||||||| ||||||||||| || | || || | ||||| ||| | || || || Sbjct 4401242 TGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGAC 4401301 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||||| | || | | | | ||| ||||||||||| || ||||| || Sbjct 4401302 ACTTACATAAAAGATCCCAAAGTAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCT 4401361 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACAT 61480 || ||| | || ||||||||||| | ||||| | |||| | ||||| | Sbjct 4401362 TGTGTCAAGAAGGCGGCAGATTGGGCCTTGCACTGGAT--TGGGGACAAAGCAGCTACCT 4401419 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| ||||| | | | ||||| | | || || | |||| ||| | |||| Sbjct 4401420 ATGGGGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTTTT---CTGGTTATTTTG 4401476 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | | || || ||| | |||||||| ||||| ||||| || || ||||| |||||| Sbjct 4401477 CATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAAC 4401536 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 | || | || ||||| | || |||||||||||| || | ||||| | | | Sbjct 4401537 TTATTAGTGGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAATC---ACC 4401593 Query 61661 TGGTGAATCGTCCGTCGGAGGAGCG--TGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 ||| | || ||||||| | | | | ||| | || | || || || Sbjct 4401594 TGGCACACAAACCACTGGAGGAGAGAATAAGAGGAAGAATTATC--AATGCTGTTCGGAT 4401651 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||||||||||| || ||||| || ||||| || ||||| || |||||||| || Sbjct 4401652 AGAACAGGAATTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCT 4401711 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC- 61837 |||| ||| || ||||| | ||| || ||| | | || || ||||| | ||| Sbjct 4401712 AATGAAGCAATACATTGAGTCTGTGGCAGACAGAC--ATGCCGGAACTGGGT-TTTAGCA 4401768 Query 61838 -GGATCT-ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 || | | | | || | ||||||||||| || ||||| | ||||| || | || Sbjct 4401769 AGGTTTTCAGAGTA--GAGAACCCATTTGACTTTATGGAGAATATTTCACT-----GAAA 4401821 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||| || || ||||| | ||| || ||||| Sbjct 4401822 GACGAACTTCTTTGAGAAGAGAGTAAAGGAGTATCA 4401857 >seq4087 Length=903614 Score = 161 bits (178), Expect = 8e-35 Identities = 248/349 (71%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||| ||||||||| | | Sbjct 27713 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCTCATCGAGTACCACG 27772 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| || Sbjct 27773 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGTGGACC 27832 Query 61145 TGTCCAAAGACATGAATGACTGGGA--GCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||||| ||||| | ||||||| | | | | | || || | |||| || Sbjct 27833 TGTCCAAGGACATTCAGCACTGGGAATCCCTGAAGCCCGAGGAGA--GATATTTTATATT 27890 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| |||| |||||||| || || || || || ||||| || || |||| || Sbjct 27891 CCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTGGAGCG 27950 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || || | | || || || |||||||| |||||||| ||||||| Sbjct 27951 ATTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCA 28009 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||| || | || || || ||||| ||| |||| || || || ||||| Sbjct 28010 TGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACAT 28058 >seq6459 Length=15015882 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 12316842 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 12316783 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||| Sbjct 12316782 GTTGCTCTTTCGATTACAAGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 12316723 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 12316722 AGACTCAATGATGGCATACCAAAG 12316699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 12320697 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAG 12320638 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 12320637 ATCTGCTTATTTAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 12320578 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || |||||||||||||| Sbjct 12320577 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGACG 12320534 >seq10880 Length=11791330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 10279271 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 10279212 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 10279211 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 10279165 >seq1678 Length=10304083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 212736 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCACG 212677 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 212676 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 212622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397512602999120