Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25]
2,004 sequences; 2,789,656,328 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq379 140 1e-30
seq113 122 4e-25
seq84 114 5e-23
seq299 109 2e-21
>seq379
Length=58131712
Score = 140 bits (154), Expect = 1e-30
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
||| || ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 50161101 TGGCACACGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 50161160
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 50161161 GAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 50161217
>seq113
Length=139301422
Score = 122 bits (134), Expect = 4e-25
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||| |||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 51882490 TGTTAGGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 51882431
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | || || ||| | |||||||| |||||| | |||||||||||| ||
Sbjct 51882430 GTGGAGGTCCATTGCAGTCCTGTCCTGCAAATCCATCGTCCGACCTGGGTATAGGGGTGA 51882371
Score = 84.2 bits (92), Expect = 9e-14
Identities = 94/125 (75%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||| | |||| ||| ||||||||||||||||||||| | | ||||||||||
Sbjct 64129042 GAGCACACGTGTTAGGAATAAAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAG 64128983
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
|||| |||||||||| | || ||| ||| | |||||| ||| ||| || ||| ||
Sbjct 64128982 GAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGTCCAACCTGGATA 64128925
Query 675 TAGGG 679
|||||
Sbjct 64128924 TAGGG 64128920
>seq84
Length=50890351
Score = 114 bits (126), Expect = 5e-23
Identities = 96/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 19116635 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGAAAACTCTG 19116694
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||| | | ||| || ||| |||||||||| ||||| || || ||||||||||
Sbjct 19116695 GTGGGCGTCTGTAGCAGTCCTGACGTGCAAATCAGTCGTCTGATCTGTGTATAGGGGC 19116752
Score = 96.9 bits (106), Expect = 1e-17
Identities = 102/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
||| ||||| | | | |||| || ||| | ||||| ||||||||||||| || | |||
Sbjct 21352556 GAGCAAGAGAACATGTTGTTAGGCCCCAAGAGATGATGAACTATGCCTGGGCAGAG-GAA 21352498
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
|||||||||||| |||||||||| | ||| || ||| |||| |||| | ||||| ||
Sbjct 21352497 GCCAGAGGAAACGCTGGTGGAGGTCTGTAGCAGTGCTGACGTGTAAATTGGTCGTCTGAT 21352438
Query 668 TTGGGTATAGGG 679
||||||| |||
Sbjct 21352437 CTGGGTATGGGG 21352426
Score = 96.9 bits (106), Expect = 1e-17
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || || ||||||| | ||||||||||| |||| ||||||||||||||||||
Sbjct 21555649 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTT 21555590
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||| || | || ||| ||| | ||||| ||| ||||| || |||||||| ||||
Sbjct 21555589 GTGGGGGTCTGTAGTGGTCCTGACCTGCAAGTCGGTCGTCTGATCTGGGTATAAGGGC 21555532
>seq299
Length=130588469
Score = 109 bits (120), Expect = 2e-21
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | | || ||||| ||||| |||||||||||||||| |||| |||
Sbjct 13781314 GAGCATGAGCACAAATATTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGGCAAAG 13781373
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| | ||| || ||| ||||||||| || || ||
Sbjct 13781374 CCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTCCTGATGTGCAAATCAGTCATCCAACC 13781433
Query 669 TGGGTATAGGGGCGA 683
||||| ||||| |||
Sbjct 13781434 TGGGTGTAGGGACGA 13781448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079957014200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |