Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq379 140 1e-30 seq113 122 4e-25 seq84 114 5e-23 seq299 109 2e-21 >seq379 Length=58131712 Score = 140 bits (154), Expect = 1e-30 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 50161101 TGGCACACGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 50161160 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 50161161 GAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 50161217 >seq113 Length=139301422 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 51882490 TGTTAGGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 51882431 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || || ||| | |||||||| |||||| | |||||||||||| || Sbjct 51882430 GTGGAGGTCCATTGCAGTCCTGTCCTGCAAATCCATCGTCCGACCTGGGTATAGGGGTGA 51882371 Score = 84.2 bits (92), Expect = 9e-14 Identities = 94/125 (75%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||| ||||||||||||||||||||| | | |||||||||| Sbjct 64129042 GAGCACACGTGTTAGGAATAAAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAG 64128983 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| |||||||||| | || ||| ||| | |||||| ||| ||| || ||| || Sbjct 64128982 GAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGTCCAACCTGGATA 64128925 Query 675 TAGGG 679 ||||| Sbjct 64128924 TAGGG 64128920 >seq84 Length=50890351 Score = 114 bits (126), Expect = 5e-23 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct 19116635 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGAAAACTCTG 19116694 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| | | ||| || ||| |||||||||| ||||| || || |||||||||| Sbjct 19116695 GTGGGCGTCTGTAGCAGTCCTGACGTGCAAATCAGTCGTCTGATCTGTGTATAGGGGC 19116752 Score = 96.9 bits (106), Expect = 1e-17 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| ||||| | | | |||| || ||| | ||||| ||||||||||||| || | ||| Sbjct 21352556 GAGCAAGAGAACATGTTGTTAGGCCCCAAGAGATGATGAACTATGCCTGGGCAGAG-GAA 21352498 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| |||||||||| | ||| || ||| |||| |||| | ||||| || Sbjct 21352497 GCCAGAGGAAACGCTGGTGGAGGTCTGTAGCAGTGCTGACGTGTAAATTGGTCGTCTGAT 21352438 Query 668 TTGGGTATAGGG 679 ||||||| ||| Sbjct 21352437 CTGGGTATGGGG 21352426 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| |||||||||||||||||| Sbjct 21555649 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTT 21555590 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| | ||||| ||| ||||| || |||||||| |||| Sbjct 21555589 GTGGGGGTCTGTAGTGGTCCTGACCTGCAAGTCGGTCGTCTGATCTGGGTATAAGGGC 21555532 >seq299 Length=130588469 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | | || ||||| ||||| |||||||||||||||| |||| ||| Sbjct 13781314 GAGCATGAGCACAAATATTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGGCAAAG 13781373 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | ||| || ||| ||||||||| || || || Sbjct 13781374 CCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTCCTGATGTGCAAATCAGTCATCCAACC 13781433 Query 669 TGGGTATAGGGGCGA 683 ||||| ||||| ||| Sbjct 13781434 TGGGTGTAGGGACGA 13781448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079957014200