Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2002 333 5e-89 seq84 185 1e-44 seq270 89.7 9e-16 seq344 80.6 5e-13 seq253 78.8 2e-12 seq633 75.2 2e-11 seq247 73.4 7e-11 >seq2002 Length=88924 Score = 333 bits (368), Expect = 5e-89 Identities = 251/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 7577 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 7636 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 7637 ACGAGGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 7696 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7697 AATTCTTCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7756 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 7757 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 7816 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 7817 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 7870 >seq84 Length=50890351 Score = 185 bits (204), Expect = 1e-44 Identities = 157/193 (81%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| || | |||||| |||||| ||||||| ||| ||||||| Sbjct 21553302 GTAAAACTAACCTGTCTCACGATGTCCTAAACTGAGCTCAGGTTCCCTGTTACTGGGTGA 21553361 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | ||||||||| | ||| | |||||| Sbjct 21553362 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCGAACACCAAAGGAT 21553418 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 | ||||||| |||||||||||| |||||| | ||||| ||||||||||||||||| || Sbjct 21553419 GATAAAGCAATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCTGTGGTATCT 21553478 Query 222 TTTCTGGCACCTC 234 | |||| ||| || Sbjct 21553479 TCTCTGACACATC 21553491 >seq270 Length=71996105 Score = 89.7 bits (98), Expect = 9e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||| |||| |||||||||||| || |||||||||||||||| ||||| Sbjct 57123297 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCGCCAC 57123238 Query 198 AAGCCAG 204 ||||||| Sbjct 57123237 AAGCCAG 57123231 >seq344 Length=82825804 Score = 80.6 bits (88), Expect = 5e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||| |||| | || |||||||| ||||| | ||||||||||||||| ||||| || || Sbjct 57840553 TCACAAAGTGATGTTGCTATGAATGCTTGACCACCACAAGCCAGTTATTCCTGTAGTCAC 57840494 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| || ||| || | ||| | || | ||||||| || || ||||| Sbjct 57840493 TTTTCTGACATCTCCTGCTTGAAACCCAAAAGGTCAGAAGGATCATGAGTCCCTGCTTTC 57840434 Query 281 ATGGTTTGTATTCA 294 | ||| |||||||| Sbjct 57840433 AAGGTCTGTATTCA 57840420 >seq253 Length=75148670 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 57662381 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 57662436 >seq633 Length=51153 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/181 (70%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || ||||||||||| |||||| | |||||| ||||||| | | ||| | || ||||| Sbjct 38977 ACCAACCTGTCTCACGACGGTTTGAACCCAACTCACGTATCTTTTTAATCGGCGAACAGC 39036 Query 107 CCAACGCTTACCGAATTCTGCTT---CGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| | |||||| | | |||| || ||| ||||||||| | || Sbjct 39037 CGAACCCTT---GGGAGCTGCTTCACCCCCAGGATACGATGAGTCGACATCGAGGTGCCA 39093 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | ||||| | ||||| ||||| | | ||||| |||||||| |||| |||| Sbjct 39094 AACCTCCCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTT 39153 Query 224 T 224 | Sbjct 39154 T 39154 >seq247 Length=91754291 Score = 73.4 bits (80), Expect = 7e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||| | |||||||||||||||||||| Sbjct 19680589 TACTGAGCAGGATTACCATGGCAACAACACATCATCATTGGGGTAAAACTAACCTGTCTC 19680530 Query 60 ATGACGGTCTAAACCCAGCTCA 81 | || ||||||||||||| ||| Sbjct 19680529 AGGATGGTCTAAACCCAGATCA 19680508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854382877824