Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25]
2,004 sequences; 2,789,656,328 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq2002 333 5e-89
seq84 185 1e-44
seq270 89.7 9e-16
seq344 80.6 5e-13
seq253 78.8 2e-12
seq633 75.2 2e-11
seq247 73.4 7e-11
>seq2002
Length=88924
Score = 333 bits (368), Expect = 5e-89
Identities = 251/294 (85%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 7577 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 7636
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 7637 ACGAGGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 7696
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7697 AATTCTTCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7756
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 7757 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 7816
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| | |||||| ||| |||||||
Sbjct 7817 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 7870
>seq84
Length=50890351
Score = 185 bits (204), Expect = 1e-44
Identities = 157/193 (81%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101
||||||||||||||||||| || | |||||| |||||| ||||||| ||| |||||||
Sbjct 21553302 GTAAAACTAACCTGTCTCACGATGTCCTAAACTGAGCTCAGGTTCCCTGTTACTGGGTGA 21553361
Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161
|| |||||| |||| |||||||||||| | ||||||||| | ||| | ||||||
Sbjct 21553362 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCGAACACCAAAGGAT 21553418
Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
| ||||||| |||||||||||| |||||| | ||||| ||||||||||||||||| ||
Sbjct 21553419 GATAAAGCAATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCTGTGGTATCT 21553478
Query 222 TTTCTGGCACCTC 234
| |||| ||| ||
Sbjct 21553479 TCTCTGACACATC 21553491
>seq270
Length=71996105
Score = 89.7 bits (98), Expect = 9e-16
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197
||||||||||| ||| |||| |||||||||||| || |||||||||||||||| |||||
Sbjct 57123297 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCGCCAC 57123238
Query 198 AAGCCAG 204
|||||||
Sbjct 57123237 AAGCCAG 57123231
>seq344
Length=82825804
Score = 80.6 bits (88), Expect = 5e-13
Identities = 98/134 (73%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220
||| |||| | || |||||||| ||||| | ||||||||||||||| ||||| || ||
Sbjct 57840553 TCACAAAGTGATGTTGCTATGAATGCTTGACCACCACAAGCCAGTTATTCCTGTAGTCAC 57840494
Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
||||||| || ||| || | ||| | || | ||||||| || || |||||
Sbjct 57840493 TTTTCTGACATCTCCTGCTTGAAACCCAAAAGGTCAGAAGGATCATGAGTCCCTGCTTTC 57840434
Query 281 ATGGTTTGTATTCA 294
| ||| ||||||||
Sbjct 57840433 AAGGTCTGTATTCA 57840420
>seq253
Length=75148670
Score = 78.8 bits (86), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218
|||||||||| || ||||| || |||||||||||||||||||||||| ||||||||
Sbjct 57662381 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 57662436
>seq633
Length=51153
Score = 75.2 bits (82), Expect = 2e-11
Identities = 126/181 (70%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|| ||||||||||| |||||| | |||||| ||||||| | | ||| | || |||||
Sbjct 38977 ACCAACCTGTCTCACGACGGTTTGAACCCAACTCACGTATCTTTTTAATCGGCGAACAGC 39036
Query 107 CCAACGCTTACCGAATTCTGCTT---CGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163
| ||| ||| | |||||| | | |||| || ||| ||||||||| | ||
Sbjct 39037 CGAACCCTT---GGGAGCTGCTTCACCCCCAGGATACGATGAGTCGACATCGAGGTGCCA 39093
Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
|| | ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||
Sbjct 39094 AACCTCCCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTT 39153
Query 224 T 224
|
Sbjct 39154 T 39154
>seq247
Length=91754291
Score = 73.4 bits (80), Expect = 7e-11
Identities = 66/82 (80%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||| | ||||||||||||||||||||
Sbjct 19680589 TACTGAGCAGGATTACCATGGCAACAACACATCATCATTGGGGTAAAACTAACCTGTCTC 19680530
Query 60 ATGACGGTCTAAACCCAGCTCA 81
| || ||||||||||||| |||
Sbjct 19680529 AGGATGGTCTAAACCCAGATCA 19680508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854382877824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |