Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq633 179 9e-43 >seq633 Length=51153 Score = 179 bits (198), Expect = 9e-43 Identities = 297/412 (72%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| |||||| | ||| ||||| ||||||||||| ||| || | | ||| Sbjct 40801 CCACAAGTCAT-CCGCTATCATTT-CAACGACAGTCGGTTCGGCCCTTCATCTGAT-GTT 40857 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | ||| ||||| ||||| ||| || ||| ||| || ||| |||||||||| | | | Sbjct 40858 ATTCAAA-TTTCAGCCTGCTCAT-GGCTAGCTCGTCCCCTTT-CGGGTCTATTGCA-ACC 40913 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187 |||| | ||||||| ||||||||||||| |||| | |||| | ||| |||| |||| Sbjct 40914 TACTAAAACGCCCTATTAAGACTCGCTTT-CGCTTCAGCTCCATTTTTCATTTAA-CTTT 40971 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 || || ||||| || | | | ||| | ||||| | |||| | || || || ||| Sbjct 40972 GCAACCTGCAATAACTCTCCGGCTCATACTTCAAAACGCACGCCATTACACATGAATGTG 41031 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 || ||| ||||| || ||||| | |||||||||||||| | || ||| || Sbjct 41032 --CTTTGACTCTTTGTAGGCTAGTAATTTCATGTTCTATTTCACTCCCATATCTGGG-TT 41088 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| |||||| |||| ||||| ||||||||||||| | | | |||||||||| ||| Sbjct 41089 CTTTTCATCTTTCCTTCACAGTACTTGTTCACTATCGGTAAATGATTAGTATTTAGACTT 41148 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| |||||||| | | ||| | || ||| ||||||| Sbjct 41149 ACCCGATGGTCCGGGTGGATTCAGAC-AGGGTTCACATGTCCCGCCCTACTC 41199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241575118336