Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq729 159 1e-36 >seq729 Length=16139 Score = 159 bits (176), Expect = 1e-36 Identities = 240/346 (69%), Gaps = 25/346 (7%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| | ||||| ||||| || |||||| ||| ||| ||||| | |||||||| Sbjct 13708 ATTAGGTTGTTGGCGGGGTAAATGCCCACCAAGCCGATGATGGGTAGCTGGACTGAGAGG 13649 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 || | ||| || ||| | ||| | |||| ||| | |||||||||| ||||||||| || Sbjct 13648 TCGACCAGCCGCAATGGGATTGAAATACGGCCCATATTCCTACGGGAAGCAGCAGTGAGG 13589 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || |||||||| | |||| |||||| ||||| || |||| |||||| || |||| Sbjct 13588 AATTTTTCACAATGGACGAAAGTCTGATGGAGCAATACCATGTGAACGATGACGGTCTTC 13529 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA------------------------TGAC 383 | | |||||| ||| | | |||| | || ||| Sbjct 13528 TGATTGTAAAGTTCTTTTATTTAGGATAAAAAGTTTGACAGGAAATGGTTAAACCGTGAT 13469 Query 384 GGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG 443 ||||| | || ||| | |||||||| ||||||||||| ||||||| || |||| Sbjct 13468 CGTACTAAATGAATAAGTGACAGCTAACTATGTGCCAGCAGCTGCGGTAAAACATAGGTC 13409 Query 444 GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | ||| ||||||||| ||| | ||||||||||| ||||||| || Sbjct 13408 ACAAGCATTATCCGGATTTA-TTGGGCGTAAAGGAAGCGTAGGCGG 13364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497569988096