Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq729 143 6e-32 >seq729 Length=16139 Score = 143 bits (158), Expect = 6e-32 Identities = 207/286 (72%), Gaps = 12/286 (4%) Strand=Plus/Plus Query 2 GCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTC---CCA--- 55 ||||||||||| ||||||| | ||||||||| |||| || | | ||| Sbjct 13427 GCTGCTGGCACATAGTTAGCTGTCACTTATTCATTTAGTACGATCACGGTTTAACCATTT 13486 Query 56 CACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTT 115 | || || |||||| || ||||||||| ||||||||| | ||| || ||||| || Sbjct 13487 CCTGTCAAACTTTTTAT-CCTAAATAAAAGAACTTTACAATCAGAAGA-CCGTCATCGTT 13544 Query 116 CAC--GCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 ||| | || | ||| ||||||| |||||||||| || ||||||||||||||| | Sbjct 13545 CACATGGTATT--GCTCCATCAGACTTTCGTCCATTGTGAAAAATTCCTCACTGCTGCTT 13602 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 ||||||||| | ||| |||| | ||| | ||| || || | | |||||||| | | Sbjct 13603 CCCGTAGGAATATGGGCCGTATTTCAATCCCATTGCGGCTGGTCGACCTCTCAGTCCAGC 13662 Query 234 TATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || ||||| | |||| ||||||| |||||||||| || ||||||| Sbjct 13663 TACCCATCATCGGCTTGGTGGGCATTTACCCCGCCAACAACCTAAT 13708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068778581248