Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2002 104 4e-20 seq247 87.8 3e-15 seq201 77.0 5e-12 >seq2002 Length=88924 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 7579 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 7522 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 7521 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 7468 >seq247 Length=91754291 Score = 87.8 bits (96), Expect = 3e-15 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || Sbjct 19680587 GTAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAA- 19680643 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || | |||||||||||||| |||||||| ||||||||||||| |||||||||| Sbjct 19680644 GCGGGGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTACGTCAGAATCC 19680697 >seq201 Length=128595539 Score = 77.0 bits (84), Expect = 5e-12 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||| | | |||||| | ||| | | || | || |||| || || || | Sbjct 76038925 AGAGGAACCACAGG-TTCAGAC-ATTTGTTGTATGTGCTTGGCTGAGGAGCCAATGGGGT 76038868 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 76038867 GAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 76038819 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 || ||||||||||||| |||||||| |||||| ||||||||||||||||| | |||| Sbjct 43990655 GCAAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCCCTCCCAG 43990598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819184096256