Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq423 190 2e-43 seq1 111 1e-19 seq113 95.1 1e-14 seq240 91.5 1e-13 >seq423 Length=130038232 Score = 190 bits (210), Expect = 2e-43 Identities = 585/887 (66%), Gaps = 32/887 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 ||||| || | ||||||| |||||| | ||||| |||| |||| || ||||||||| Sbjct 41478665 CGTTTTGTCATCTTCCCCAACGAGTACCATGATATCTGGCAGATGTGTAAGAAGGCGGAA 41478606 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--C 61171 |||||||||||||| |||||||| || ||||||| ||||| ||||||| | Sbjct 41478605 GCTTCCTTCTGGACCTCCGAGGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCC 41478546 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 | | | | || || | |||| || ||||| ||| |||||||| || | Sbjct 41478545 CTGAAGCCCGAGGAGAG--AGATTTTATATCCCATGTTCTGGTTTTCTTTGC-GCAAGTG 41478489 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 | || || || |||| || || |||| || ||| || || || || || ||| | || Sbjct 41478488 ATGGCATAGTAAATGCAAACTTGGTGGAGCGATTTAGC-CAAGAAGTTCAGGTGACAGAA 41478430 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || || ||||||| |||||||| ||||||||||| || | || || | ||||| ||| Sbjct 41478429 GCCCGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGT 41478370 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410 | || | || || ||||| | || | ||| | ||| ||||||||||| Sbjct 41478369 TTCCTTACTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATT 41478310 Query 61411 GAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA 61470 || ||||| || || || ||| || ||||||||||| | ||||| | ||| Sbjct 41478309 GAAACGATGCCTTGTGTCAAAAAGAAGGCAGATTGGGCCTTGCACTGGAT--TGGGGACA 41478252 Query 61471 A--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 | | ||||| | ||| ||||| | | | ||||| | | || || | |||| Sbjct 41478251 AATCAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTTTT--- 41478195 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 ||| | ||||| | || || ||| | |||||||| ||||| ||||| || || || | Sbjct 41478194 CTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACAT 41478135 Query 61589 TCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 | |||||| | || | || | || ||||| | || |||||||||||| || | Sbjct 41478134 TTTCCAATGAACTTATCAGCA-GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATG 41478076 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 ||||| | | ||||| | || | ||||||| | | | || | || | Sbjct 41478075 TTCAATC---ACCTGGTACACAAACCATTGGAGGAGAGAATAAGAGAAAGAATTATCAAT 41478019 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || || |||||||| || || ||||| || ||||| || ||||| || ||| Sbjct 41478018 GCTGTTCGGATAGAACAGGACTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATG 41477959 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 ||||| |||| | ||| || ||||| ||||| | ||| | | || | || || Sbjct 41477958 AATTGCACTCTAAGGAAGCAATACATTGAGTTTGTGACAGACAGGC--ATGCTGGAACTG 41477901 Query 61828 GGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 ||| | ||| || | | | | || | ||||||||||| || ||||| | ||||| Sbjct 41477900 GGT-TTTAGCAAGGTTTTCAGAGTA--GAGAACCCATTTGACTTTATGGAGAATATTTCA 41477844 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | |||||||| || || ||||| | ||| | || ||||| Sbjct 41477843 CT-----GAAAGACGAACTTCTTTGAGAAGAGAGTAAGGGAGTATCA 41477802 >seq1 Length=126035930 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 62620385 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 62620444 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||| Sbjct 62620445 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 62620504 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 62620505 AGACTCAATGATGGCATACCAAAG 62620528 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 62616546 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAG 62616605 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 62616606 ATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 62616665 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || |||||||||||||| ||||| || ||||| |||||||| Sbjct 62616666 GCATCTGCCAGACCTTGAACCCCAATTCCAATGGGGCGATGACG 62616709 >seq113 Length=139301422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 97076368 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 97076309 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 97076308 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 97076262 >seq240 Length=107702431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 97518885 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 97518826 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 97518825 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 97518771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558289898560