Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_031901.1 Length=42927 Score E Sequences producing significant alignments: (Bits) Value seq299 98.7 3e-16 >seq299 Length=130588469 Score = 98.7 bits (108), Expect = 3e-16 Identities = 68/74 (92%), Gaps = 5/74 (7%) Strand=Plus/Plus Query 31996 TGTGTATGACATTTTTACCTCtttttttCTAAACTGCTACCGTGCTACCGATAAATTCTA 32055 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 9231977 TGTGTTT-ACATTTTTACCTCTTTTTT-CTAAACTGCTACCGTGCTACCGATAAATTCTA 9232034 Query 32056 AAAA---GTAAAAA 32066 |||| ||||||| Sbjct 9232035 AAAAGAGGTAAAAA 9232048 Score = 93.3 bits (102), Expect = 1e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 31962 TTTCATCTACCATGTTGTCAAAATATAGTGTTACTGTGTATGACATTTTTACCTCttttt 32021 |||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 9232071 TTTCGTCTACAATGTTGTCAAAAAATAATGTTACTGTGTATGACATTTTTACCTCTTTTT 9232130 Query 32022 t 32022 | Sbjct 9232131 T 9232131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137241533916872