Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5015 208 1e-51 seq8793 149 1e-33 seq5348 147 3e-33 seq7794 123 4e-26 >seq5015 Length=19474990 Score = 208 bits (230), Expect = 1e-51 Identities = 199/251 (79%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 19312643 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 19312701 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC---- 127 ||| || | |||||| | |||| | |||||||||||||| | | || || Sbjct 19312702 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGAAGGCCGACTGCT 19312760 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | ||| ||| | |||| | | |||||| ||| ||||| ||||| ||||||| Sbjct 19312761 CAGGGATCATGTAACTAGTCAGCATGCCATGGTCTCATTCCTTATCAGAATTTACCAGAC 19312820 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||| Sbjct 19312821 AAATCGCTCCACCAACTAAAACTGGCCATGCACCACCACCCATAGAATCGAGAAAGAGCT 19312880 Query 248 ATCAATCTGTC 258 ||| ||| || Sbjct 19312881 GTCAGTCTATC 19312891 >seq8793 Length=9245426 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| | |||| | || |||||||| |||||| ||||||||||||||||| |||||||| Sbjct 2878459 CTAGTGAGCATTTCAAAGTCTCGTTTGTTATCAAAATTAACCAGACAAATCGCTCCACCA 2878518 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| |||||||||||||||||| || Sbjct 2878519 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTATC 2878575 >seq5348 Length=30138891 Score = 147 bits (162), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 3702813 GTCAGTGTAGCGCACATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 3702755 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 ||| | || |||||| | |||| | ||||||||||||| || | | || | Sbjct 3702754 CAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGCGGGATGCTGACTGCT 3702696 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 3702695 TGGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 3702636 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| || ||||| Sbjct 3702635 AAATTACTCCACCAACTAAGAACTGCTATGCA 3702604 >seq7794 Length=341288 Score = 123 bits (136), Expect = 4e-26 Identities = 179/246 (73%), Gaps = 20/246 (8%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||| | || |||| |||||| |||||| ||||||||| |||||| || |||| Sbjct 83290 CAGTGTAACACGTGTGCAGCCCAGGACATCTGAGGGCATCAGAGACCTACTA----CTCA 83345 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC--CAACCATAGTC 134 || | |||||| | |||| | |||||||||| |||| || || ||||| || Sbjct 83346 GTCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAAAAGCTAGGGACGCCAACCGC--TC 83402 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | | | ||| || | | ||||| ||||||||||||||||||||| | | Sbjct 83403 G--GCGTTCACTTATCACGCCAGAGTCTC---CGTTATCGGAATTAACCAGACTC--CGC 83455 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||| ||||||||||||||||||||||| | ||| | ||| |||||||| || Sbjct 83456 TCCACCAA----GAACGGCCATGCACCACCACCCACGGGATCGATAAACAGCTATCAGTC 83511 Query 255 TGTCCT 260 |||| Sbjct 83512 AATCCT 83517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796698695844