Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq5860 333 5e-89
seq8982 217 3e-54
seq3627 93.3 7e-17
seq8681 86.0 1e-14
seq5226 84.2 4e-14
seq5027 78.8 2e-12
>seq5860
Length=1925457
Score = 333 bits (368), Expect = 5e-89
Identities = 249/290 (86%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 188210 TACTGAGCAGGATTACCAT---GGCAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 188266
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 188267 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 188326
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 188327 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTCGCTA 188386
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 188387 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 188446
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289
| ||| | || | |||||||| ||||| | |||||| ||| |||
Sbjct 188447 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGT 188496
>seq8982
Length=576967
Score = 217 bits (240), Expect = 3e-54
Identities = 162/189 (86%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101
|||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 506885 GTAAAACTAACCTGTCTCATGACGTTCTAAACCCAGCTCAGGTTCCCTATTACTGGGTGA 506826
Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161
|| ||||||||||| |||||||||||| | |||||||||||| |||| || ||||
Sbjct 506825 ACCATCCAACGCTTGGTGAATTCTGCTTC---ACAATAGGAAGAGCCAACATTGAGGGAT 506769
Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
||||||| || || |||||||| |||||| || |||| |||||||||||||| || ||
Sbjct 506768 CAAAAAGGGACATCACTATGAACTCTTGGCCGCTACAAAGCAGTTATCCCTGTGATATCT 506709
Query 222 TTTCTGGCA 230
|||||| ||
Sbjct 506708 TTTCTGACA 506700
Score = 185 bits (204), Expect = 1e-44
Identities = 157/193 (81%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101
||||||||||||||||||| || | ||||||| |||||| ||||| | ||| |||||||
Sbjct 299882 GTAAAACTAACCTGTCTCACGATGTTCTAAACTAAGCTCAGGTTCCTTGTTACTGGGTGA 299823
Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161
|| |||||| |||| |||||||||||| | ||||||||| || ||| | ||||||
Sbjct 299822 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCCAACACCAAAGGAT 299766
Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
|||||||||| || |||||||| ||||| | ||||| ||||||||||||||||| ||
Sbjct 299765 CAAAAAGCAATGTTGCTATGAATTCTTGGTCACTACAAGGCAGTTATCCCTGTGGTATCT 299706
Query 222 TTTCTGGCACCTC 234
| |||| ||| ||
Sbjct 299705 TCTCTGCCACATC 299693
>seq3627
Length=8656713
Score = 93.3 bits (102), Expect = 7e-17
Identities = 157/228 (69%), Gaps = 21/228 (9%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| |||||| ||||| ||| | | |||| | ||||||||||| | ||
Sbjct 7834019 TCATCAGTAGGACAAAACTGTCCTGTATCACCATTGCCTAATCACAGCTCACGTT-CTTA 7833961
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137
||| |||||||||||||| || |||| ||| ||||||| ||||
Sbjct 7833960 TTAATGGGTGAACAATCCCACCCTTAGTGAAGGCTGCTTCACAATGAAGAACCAATATTT 7833901
Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAA-AAGCA---ACGTCGCTATGAACGCTTGG 190
| |||| || | ||| ||||| |||| || || | | || ||||| |||||
Sbjct 7833900 TACAACGAAGTGCTAATATCTAAGGACCAAACAAACAGTGGCATTGCCATGAATACTTGG 7833841
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
| ||||| || | ||| ||||||||| |||||| ||||||| ||
Sbjct 7833840 CCACCACATTGCAATGATCTCTGTGGTAAACTTTCTGACACCTCTTGC 7833793
>seq8681
Length=27971852
Score = 86.0 bits (94), Expect = 1e-14
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197
||||||||||| ||| |||| |||||||||||| || |||||||||||||||| ||||
Sbjct 15887233 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCACCAC 15887292
Query 198 AAGCCAG 204
|||||||
Sbjct 15887293 AAGCCAG 15887299
>seq5226
Length=3426574
Score = 84.2 bits (92), Expect = 4e-14
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCA 81
|||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1909470 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGATGGTCTAAACCCAGCTCA 1909420
>seq5027
Length=2482322
Score = 78.8 bits (86), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218
|||||||||| || ||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1604093 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 1604038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854287868544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |