Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5860 333 5e-89 seq8982 217 3e-54 seq3627 93.3 7e-17 seq8681 86.0 1e-14 seq5226 84.2 4e-14 seq5027 78.8 2e-12 >seq5860 Length=1925457 Score = 333 bits (368), Expect = 5e-89 Identities = 249/290 (86%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 188210 TACTGAGCAGGATTACCAT---GGCAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 188266 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 188267 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 188326 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 188327 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTCGCTA 188386 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||||||||| |||||| || Sbjct 188387 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 188446 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 | ||| | || | |||||||| ||||| | |||||| ||| ||| Sbjct 188447 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGT 188496 >seq8982 Length=576967 Score = 217 bits (240), Expect = 3e-54 Identities = 162/189 (86%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 506885 GTAAAACTAACCTGTCTCATGACGTTCTAAACCCAGCTCAGGTTCCCTATTACTGGGTGA 506826 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || ||||||||||| |||||||||||| | |||||||||||| |||| || |||| Sbjct 506825 ACCATCCAACGCTTGGTGAATTCTGCTTC---ACAATAGGAAGAGCCAACATTGAGGGAT 506769 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||||||| || || |||||||| |||||| || |||| |||||||||||||| || || Sbjct 506768 CAAAAAGGGACATCACTATGAACTCTTGGCCGCTACAAAGCAGTTATCCCTGTGATATCT 506709 Query 222 TTTCTGGCA 230 |||||| || Sbjct 506708 TTTCTGACA 506700 Score = 185 bits (204), Expect = 1e-44 Identities = 157/193 (81%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| || | ||||||| |||||| ||||| | ||| ||||||| Sbjct 299882 GTAAAACTAACCTGTCTCACGATGTTCTAAACTAAGCTCAGGTTCCTTGTTACTGGGTGA 299823 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | ||||||||| || ||| | |||||| Sbjct 299822 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCCAACACCAAAGGAT 299766 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||| || |||||||| ||||| | ||||| ||||||||||||||||| || Sbjct 299765 CAAAAAGCAATGTTGCTATGAATTCTTGGTCACTACAAGGCAGTTATCCCTGTGGTATCT 299706 Query 222 TTTCTGGCACCTC 234 | |||| ||| || Sbjct 299705 TCTCTGCCACATC 299693 >seq3627 Length=8656713 Score = 93.3 bits (102), Expect = 7e-17 Identities = 157/228 (69%), Gaps = 21/228 (9%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| ||| | | |||| | ||||||||||| | || Sbjct 7834019 TCATCAGTAGGACAAAACTGTCCTGTATCACCATTGCCTAATCACAGCTCACGTT-CTTA 7833961 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| |||||||||||||| || |||| ||| ||||||| |||| Sbjct 7833960 TTAATGGGTGAACAATCCCACCCTTAGTGAAGGCTGCTTCACAATGAAGAACCAATATTT 7833901 Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAA-AAGCA---ACGTCGCTATGAACGCTTGG 190 | |||| || | ||| ||||| |||| || || | | || ||||| ||||| Sbjct 7833900 TACAACGAAGTGCTAATATCTAAGGACCAAACAAACAGTGGCATTGCCATGAATACTTGG 7833841 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | ||||| || | ||| ||||||||| |||||| ||||||| || Sbjct 7833840 CCACCACATTGCAATGATCTCTGTGGTAAACTTTCTGACACCTCTTGC 7833793 >seq8681 Length=27971852 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||| |||| |||||||||||| || |||||||||||||||| |||| Sbjct 15887233 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCACCAC 15887292 Query 198 AAGCCAG 204 ||||||| Sbjct 15887293 AAGCCAG 15887299 >seq5226 Length=3426574 Score = 84.2 bits (92), Expect = 4e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCA 81 |||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1909470 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGATGGTCTAAACCCAGCTCA 1909420 >seq5027 Length=2482322 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 1604093 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 1604038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854287868544