Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3971 212 5e-50 seq6727 116 3e-21 seq2336 95.1 1e-14 seq7904 91.5 1e-13 >seq3971 Length=4903791 Score = 212 bits (234), Expect = 5e-50 Identities = 608/918 (66%), Gaps = 33/918 (4%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || | || || || | |||||||||||||| | | Sbjct 745256 ATGAGCCGCTGCTGAGAGAAAACCCCTGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 745197 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || ||||||||||||||||||||||| | |||||||| || Sbjct 745196 ATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACC 745137 Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||||| ||| | ||||||| | | | | | || || | |||| || Sbjct 745136 TGTCCAAGGACGTTTGGCACTGGGAATCCCTGAAGCCCGAGGAGAG--AGATTTTATATC 745079 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | ||| |||||||| || || || || || ||||| || || |||| || Sbjct 745078 TCATATTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCG 745019 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || || || | || || || ||||||| |||||||| ||||||| Sbjct 745018 ATTTAGC-CAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCA 744960 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 | || || | || || || ||||| ||| | | || || || ||||| | || | Sbjct 744959 TAGAAAACATACATTCTGAAATGTATAGTTTCCGTATTGACACTTACATAAAAGATCCCA 744900 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| | |||||||||| || ||||| || || ||| ||| || | Sbjct 744899 AAGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 744840 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGC 61499 |||||||||| | ||||| | |||| | ||||| | ||||||||| | | | Sbjct 744839 ATTGGGCCTTGCACTGGATTGG--GGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGT 744782 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | | || || | |||| ||| | ||||| | || || ||| | || Sbjct 744781 CTTTGCTGCAGCAGAAGGCATCTTTTC---TGGTTATTTTGCATCGATATTCTGGCTCAA 744725 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGG 61618 |||||| ||||| ||||| || || || || |||||| | || | || | || |||| Sbjct 744724 GAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGATGAGG 744666 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || |||||||||||| || | ||||||| | ||||| | || || Sbjct 744665 GTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACAC---CTGGTACACAAACCACTGG 744609 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 ||||| | || | || || || | || || || ||||||||||| || |||| Sbjct 744608 AGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTG 744549 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | || ||||| || | || || |||||||| |||||| ||| | ||||| | Sbjct 744548 AGGCCTTGCCTGTGAAGCCTATTGGGATGAATTGCACTCTAATGAAGCAATGCATTGAGT 744489 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAA 61855 |||| || ||| | | || | || ||||| | ||| || | | | | || | | Sbjct 744488 TTGTGGCAGACAGAC--ATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGA 744434 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 |||||||||| || ||||| | ||||| || | |||||||| || || ||||| Sbjct 744433 ACCCATTTGACTTTATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGA 744379 Query 61916 GTGTA--GGCGACTATCA 61931 | ||| || || ||||| Sbjct 744378 GAGTAAGGGAGAGTATCA 744361 >seq6727 Length=1359887 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| ||||||||||| ||||| ||||| |||| ||||| || Sbjct 319393 GGTGTACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 319452 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || ||| Sbjct 319453 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTTTG 319512 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 319513 AGACTCAATGATGGCATACCAAAG 319536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 |||||||||||| | |||||||| || || ||| || ||||||| || || || || | Sbjct 315549 CTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAGATCTG 315608 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTC 65814 ||| ||| | || || | ||||| | || | |||||||| ||||| || Sbjct 315609 CTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAAGCATC 315668 Query 65815 GGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 ||||||||||| || ||||| || ||||| |||||||| Sbjct 315669 TGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 315707 >seq2336 Length=9258750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 5786096 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 5786155 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 5786156 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 5786202 >seq7904 Length=13651311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 3491189 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 3491130 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| |||||||| || ||||| |||||||||||||| | |||||||| Sbjct 3491129 ATATCTGGCAGATGTACAAGAAAGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGT 3491075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397504409495360