Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2131349 149 3e-33 seq2135433 145 3e-32 seq2114942 145 3e-32 seq1702860 116 1e-23 seq1657679 114 5e-23 seq2129834 111 6e-22 seq2181527 102 3e-19 seq2404380 96.9 1e-17 seq2097589 91.5 6e-16 seq1574109 91.5 6e-16 seq2288652 89.7 2e-15 seq1728044 80.6 1e-12 seq2350400 77.0 1e-11 >seq2131349 Length=213 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 196 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 137 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 136 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCGGACCTGGGTATAGGGGCGA 77 >seq2135433 Length=201 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 18 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 77 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||| ||| ||||| | ||||||||||||||| Sbjct 78 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAGTCGGTCGTCCGACCTGGGTATAGGGGCGA 137 >seq2114942 Length=201 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 184 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 125 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| ||||||||||||||| Sbjct 124 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGCCCTGGGTATAGGGGCGA 65 >seq1702860 Length=6599 Score = 116 bits (128), Expect = 1e-23 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| |||| |||||| ||||||||||||||||||||| || |||| | |||||| Sbjct 4525 AGCATAA-TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGAGTGATGACAGAGG 4467 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| | || ||| ||| ||||||||| || || |||||||||| Sbjct 4466 AAACTCTGGTGGAGGTCTGTAGTGGTCCTGACGTGCAAATTTGTCATCTGATTTGGGTAT 4407 Query 676 AGGG 679 |||| Sbjct 4406 AGGG 4403 >seq1657679 Length=3863 Score = 114 bits (126), Expect = 5e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | |||| |||||||||||||||||||||||| ||| |||| |||||||||| Sbjct 3282 AGCACACGTGTTAGGACCCGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCAGAGA 3223 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 | | ||||||||||| ||||| ||| ||| ||||||||||| ||||| Sbjct 3222 AGATTCTGGTGGAGGTCCGCAGTGGTCCTGACGTGCAAATCGGTCGTC 3175 >seq2129834 Length=220 Score = 111 bits (122), Expect = 6e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| |||| |||||||||||||||||||||||||| || |||||| ||| | Sbjct 220 CTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGAC 161 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| ||||| | ||||||||||||||| Sbjct 160 GTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 125 >seq2181527 Length=225 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| |||||||||||||||||||||||||| || |||||| ||| ||||||||||| | Sbjct 220 AGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGT 161 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||||||||||||||| Sbjct 160 CGTCCGACCTGGGTATAGGGGCGA 137 >seq2404380 Length=229 Score = 96.9 bits (106), Expect = 1e-17 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 164 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 223 Query 624 GTGGAG 629 |||||| Sbjct 224 GTGGAG 229 >seq2097589 Length=203 Score = 91.5 bits (100), Expect = 6e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 92 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 151 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 | ||| ||||||||||| ||||||| || | ||||| ||||||| Sbjct 152 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAG 201 >seq1574109 Length=14762 Score = 91.5 bits (100), Expect = 6e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | ||| ||||||| || ||||||||||| || | ||||||||||||||||||| Sbjct 14088 TGTTAGCACCTGAAAGATAGTAAACTATGCCTGGGCAGAGCGAAGCCAGAGGAAACTCTG 14147 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | | ||| || ||| || ||| | ||||||||| || || |||||| |||||| Sbjct 14148 GAGTAGGTCCGTAGCAGTCCTGCCATGCAAATCGTTCATCCGGCCTGGGTACAGGGGC 14205 >seq2288652 Length=3616 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||| ||||||||||| ||||| |||| |||||||||| | |||| Sbjct 1738 TGTTAGGACCCGAAAAATGGTGAACTACGCCTGGGCAGGGCGAAGCCAGAGTA---TCTG 1794 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||||| ||| | ||||| || ||| | ||||||| ||||||| Sbjct 1795 GTGGAGATACGCAGCGGTCCTGACATGCAACTCCCCTGTCCAGCCTGGGTAT-GGGGCGA 1853 >seq1728044 Length=2861 Score = 80.6 bits (88), Expect = 1e-12 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| || |||| ||||| |||||||||||| ||||| |||| || | ||||||||| Sbjct 219 GAGCACAGGTGTTAGGACCGGAAAGATGGTGAGCTATGACTGAGCAGTGCAAAGCCAGAG 278 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||| ||||||| ||| | ||| | || ||||||||| || | | | |||| Sbjct 279 AAAATTCTGGTGTAGGTCTGTAGCAATCCTAAAGTGCAAATCAGTCCGCCGACCTCGGTA 338 Query 675 TAGGGGC 681 ||||||| Sbjct 339 TAGGGGC 345 >seq2350400 Length=1167 Score = 77.0 bits (84), Expect = 1e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | || || |||||| | ||||| ||||||| Sbjct 881 GAGTCAGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACCCCATCTAAGGCTAAAT 940 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||| ||| ||||||| | | ||||| ||||||| |||||| Sbjct 941 ACTGGCACAAGACCAGTAGTCAACAAGTACAATATGGGAAAGTTGAAAAGAACTTTG 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2010688507750