Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2069642 212 1e-52 seq1521951 176 7e-42 seq47583 154 2e-35 seq422192 141 1e-31 seq1128806 140 5e-31 seq1611109 131 3e-28 seq2412127 122 1e-25 seq2829687 114 2e-23 seq2142821 93.3 7e-17 seq1815652 80.6 4e-13 seq1729297 77.0 5e-12 >seq2069642 Length=238 Score = 212 bits (234), Expect = 1e-52 Identities = 190/233 (82%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 231 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 173 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 172 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 114 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 113 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 54 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||| |||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 53 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGA 1 >seq1521951 Length=8986 Score = 176 bits (194), Expect = 7e-42 Identities = 197/255 (77%), Gaps = 15/255 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||| |||||| | |||| | |||||| |||||||||||||||||| ||||||||||| | Sbjct 8089 TCATTGTAGCACTTGTGCAGACCCAGA-CATCTAAGGGCATCACAGGCCTGTTATTGC-T 8146 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | ||| | |||||||||||||| | | ||||||| | Sbjct 8147 CAATCT-CTGGTGGCTGAACACCACTTGTCCCTCTAAGAAGGTGGGGGACGCCAACCACT 8205 Query 131 AGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTT----ATCGGAATTAACC 183 | | | | | || |||||| | | | |||||| ||| | ||||||||||| Sbjct 8206 CGGGGGTTGCGTAAGTAGTTAGCATGCCAGAGCCTCGTTTGTTTGTTACCGGAATTAACC 8265 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||||| |||||||| ||||||| ||||||||||||||||||| ||||| |||||| Sbjct 8266 AGACAAATTGCTCCACCAGCTAAGAATGGCCATGCACCACCACCCAAGGAATCGAGAAAG 8325 Query 244 AGCTATCAATCTGTC 258 ||||||||||||||| Sbjct 8326 AGCTATCAATCTGTC 8340 >seq47583 Length=235 Score = 154 bits (170), Expect = 2e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 79 GTCTCATTCATTATCTGAATTAACCAGACAAATCACTCCACCAACTAAGAACAGCCATGC 138 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||||| ||||||||| Sbjct 139 ACCACCACCCACAGAATCAAGAAAGAGCTACCAATCTGTC 178 >seq422192 Length=1460 Score = 141 bits (156), Expect = 1e-31 Identities = 181/245 (74%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 ||||| ||||| ||||||||||||||||||||||||||||||| ||| || | || Sbjct 1147 GCGTGTGGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-TCATTCT-CAGGTG 1204 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCAT-----AGTCGATGG 139 |||| | |||| | |||||||||||||| | |||| || |||||| | Sbjct 1205 GCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACTGCTCGGGAGTCGA-GT 1263 Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 || || | | | | | ||| |||||| | |||||||||| || ||||| | |||| Sbjct 1264 AACTGGTTGGTATGCCAGAGCCTCCTTCGTTGTTGGAATTAACCGGATAAATCTCCCCAC 1323 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 ||||||||| ||||| | ||||||||||| | | |||||||||| ||||||||||| Sbjct 1324 CAACTAAGAGTGGCCACGTACCACCACCCAGGGGACAGAGAAAGAGCTGTCAATCTGTCC 1383 Query 260 TCCCT 264 | ||| Sbjct 1384 TTCCT 1388 >seq1128806 Length=366 Score = 140 bits (154), Expect = 5e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || ||||||| |||||||||||||||| |||||||| Sbjct 188 CTAGTTAGCATTTCAAAGTCTCATTTGTTATCGAAATTAACCAGACAAATTGCTCCACCA 129 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| | ||| |||||||||| ||||||| || Sbjct 128 ACTAAGAACGGCCATGCACCACCACCCACAAAATTGAGAAAGAGCTGTCAATCTATC 72 >seq1611109 Length=12453 Score = 131 bits (144), Expect = 3e-28 Identities = 97/113 (86%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||||||| |||||||||||||||||||||||| |||||||||| Sbjct 8876 TTAGCATGCCAGAGTCTCGTTTGTTATCGGAATTAACCAGACAAATAACTCCACCAA--- 8820 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||| ||||||||| ||||| ||||||||||||||||||||| Sbjct 8819 -GAACAGCCATGCATCACCACCCACGGAATCCAGAAAGAGCTATCAATCTGTC 8768 >seq2412127 Length=597 Score = 122 bits (134), Expect = 1e-25 Identities = 98/117 (84%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||| ||||| |||||||||||| || | |||||||| Sbjct 521 CTAGTTAGCATGCCAGAGTCTTGTTCATTATCAGAATTAACCAGAAAACTG-CTCCACCA 463 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| | | |||| | |||||||||||||||||||||||||||| Sbjct 462 ACTAAGAACGGCCATGTAACGCCACTTACAGAATCAAGAAAGAGCTATCAATCTGTC 406 >seq2829687 Length=244 Score = 114 bits (126), Expect = 2e-23 Identities = 86/100 (86%), Gaps = 6/100 (6%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| ||||| ||| |||||||| |||| |||||||||| ||| |||||||| Sbjct 136 GTCTCGTTTGTTATTGGAGTTAACCAGGCAAA--ACTCCACCAA----GAATGGCCATGC 83 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| ||||| ||||||||||||||||||||| Sbjct 82 ATCACCACCCATGGAATCCAGAAAGAGCTATCAATCTGTC 43 >seq2142821 Length=237 Score = 93.3 bits (102), Expect = 7e-17 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 168 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 226 Query 75 CAAACT 80 ||| || Sbjct 227 CAATCT 232 >seq1815652 Length=1422 Score = 80.6 bits (88), Expect = 4e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||| | |||| |||| | |||||||| ||||||||||||||||| || |||| Sbjct 966 CAGTGTAGCATGTGTGCAGCCCCGGACATCTAAATGCATCACAGACCTGTTAGTG-CTCA 908 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 | | || |||||| | |||| | |||||||||| || Sbjct 907 ATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAAAA 871 >seq1729297 Length=7608 Score = 77.0 bits (84), Expect = 5e-12 Identities = 134/186 (72%), Gaps = 13/186 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || |||||||||| ||||| | |||||| ||||||||||||||| ||| | ||||| | | Sbjct 7359 GTTAGTGTAGCGCACGTGCAGTCCCAGA-CATCTAAGGGCATCATAGATCAGTTATCG-C 7302 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCAT 130 |||| | || ||| || | |||| | ||||||||||| | | | ||| ||| Sbjct 7301 TCAATC-TCGGGTGGATGAATGCCACTTGTCCCTCTAAGCAGTTGGGGGATACCCACC-- 7245 Query 131 AGTCGATGG--GGCTATTTA--GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | || |||| | || || ||| | | ||| ||| | |||| |||||||||||| Sbjct 7244 ACTCCATGGTAGCATAACTAGTGCATGCCAGAGTCATGTTAGATATCAGAATTAACCAGA 7185 Query 187 CAAATC 192 |||||| Sbjct 7184 CAAATC 7179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771857556705