Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2142821 192 1e-46 seq2103126 143 5e-32 seq1729297 111 3e-22 seq2158440 109 1e-21 seq2069642 100 5e-19 seq1521951 100 5e-19 seq422192 96.9 6e-18 seq1172088 95.1 2e-17 >seq2142821 Length=237 Score = 192 bits (212), Expect = 1e-46 Identities = 177/223 (79%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 232 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 174 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | | ||| ||||| ||| |||||| | | || | Sbjct 173 ACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCC 114 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| Sbjct 113 CATTCGTGGTGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 54 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| |||||||||| |||||||||||||||| Sbjct 53 TGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 11 >seq2103126 Length=233 Score = 143 bits (158), Expect = 5e-32 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||| | |||| ||||||||||||||||||| | || || || | | ||| |||| Sbjct 233 GATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCG 174 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 | ||| |||||| | | || | | ||||| ||||||| | | |||||||||||| Sbjct 173 GCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTC 114 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| ||||||| Sbjct 113 CCCCTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTG 54 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 53 CCCTTTGTA 45 >seq1729297 Length=7608 Score = 111 bits (122), Expect = 3e-22 Identities = 165/226 (73%), Gaps = 11/226 (5%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG-CCGCACGCGCGCTA 164 || ||||| | ||||| | ||| ||||||||||||||| |||||| | ||||| |||||| Sbjct 7295 AGATTGAG-CGATAACTGATCTATGATGCCCTTAGATG-TCTGGGACTGCACGTGCGCTA 7352 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA- 223 |||| || | || | || | | |||| ||| | |||| ||||| || ||| || Sbjct 7353 CACTAACTGGCTCAGCATGTGCCTACCCTTTGCCAGCAGGTGCAGGTAA-CTCGTTGAAC 7411 Query 224 -CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 || | | || ||||||| | |||||||||||| ||| | ||| ||||| || ||| Sbjct 7412 CCTATTTAATGATGGGGATTGGAGATTGCAATTATT-CTCATGAACAAGGAACTCCCAGT 7470 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||| ||| || |||| ||||||||||||| || Sbjct 7471 AAATGCGGGTCATAAGCTTGC----ATTAAGTCCCTGCCCTTTTTA 7512 >seq2158440 Length=211 Score = 109 bits (120), Expect = 1e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 194 GCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 135 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| ||| Sbjct 134 ATTCCCCATGAACGAGGAATTCCCAGTAAGGGCGGGTCATAAGCTTGCGTTGATTAAGTC 75 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 74 CCTGCCCTTTGTA 62 >seq2069642 Length=238 Score = 100 bits (110), Expect = 5e-19 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 133 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 190 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| | |||| ||||||||||||||||||| Sbjct 191 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 231 >seq1521951 Length=8986 Score = 100 bits (110), Expect = 5e-19 Identities = 156/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| || | ||||| |||||||||| ||||| Sbjct 8186 CTTCTTAGAGGGACAAGTGGTGTTCAGCCACCAGA-GATTGAG-CAATAACAGGCCTGTG 8129 Query 131 ATGCCCTTAGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||| ||||| | |||| | |||||| ||| | || | || | | Sbjct 8128 ATGCCCTTAGATGT-CTGGGTCTGCACAAGTGCTACAATGATTGGCTCAGTGTGTGCCTA 8070 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| |||| ||||||| | | || ||| | ||| ||||||| | | ||| Sbjct 8069 CCCTAGGC----AGGTGTGGGTAACCCATTGAATCTCATTTGTGATGGGGATCGGGGATT 8014 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||||||||| | | | ||| |||||| || |||||| Sbjct 8013 GCAATTATTCCACGTGAACAAGGAATTCCCAGTAAG 7978 >seq422192 Length=1460 Score = 96.9 bits (106), Expect = 6e-18 Identities = 180/258 (70%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | |||| |||||||||||||||| Sbjct 1232 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GAATGAG-CAATAACAGGTCTGTG 1175 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||| ||||| || || |||| ||| || |||| | Sbjct 1174 ATGCCCTTAGATGTCTGGGGCCACACGC-AGCCACGGTGACTAGCCCAGCGTGTTCCT-- 1118 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | |||| |||| || |||| | | | | ||||| |||||| | | |||| Sbjct 1117 -CCTACCCGGCAGGTTTGAGTAACCCACGGAGCCCCGTTCGTGACGGGGATCGGGGATTG 1059 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||||||||| || || ||| || ||||| ||| | | | Sbjct 1058 CAATTATTCCCCATGGACGAGGAATTCCCAGGAAGTGCTGGTCATAAGCTTGTG----TC 1003 Query 311 ACGTCCCTGCCCTTTGTA 328 | | ||||||||||||| Sbjct 1002 AAATTCCTGCCCTTTGTA 985 >seq1172088 Length=238 Score = 95.1 bits (104), Expect = 2e-17 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||| || | ||| | | |||| |||||| | || | || | | ||| Sbjct 237 CTTAGATGTGTGGGACTGCATGTGTGCTATACTGACTGGCTCAGTGTGTGCCTACCCTAT 178 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || || |||| ||||||| || | || | | | ||| |||||| | | ||||||||| Sbjct 177 GCTGGCAGGTGTGGGTAACCTGTTGAACCCCATTTGTGATGGGGAGTGGGGATTGCAATT 118 Query 256 ATTGCTCTTCA---ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| || || | ||||||| || |||||| | | ||||| ||| | |||||||| Sbjct 117 ATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTGAGTTGATTAA 58 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 57 GTCCCTGCCCTTTGTA 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916593079040