Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq13262 197 3e-48 seq12612 197 3e-48 seq9916 197 3e-48 seq13899 158 2e-36 seq4939 127 4e-27 seq10391 116 7e-24 seq5046 116 7e-24 >seq13262 Length=5216 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 3266 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3323 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 3324 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 3383 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 3384 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 3443 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 3444 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 3503 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3504 AAGTCCCTGCCCTTTGTA 3521 >seq12612 Length=3819 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 3091 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3034 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 3033 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2974 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2973 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2914 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2913 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2854 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2853 AAGTCCCTGCCCTTTGTA 2836 >seq9916 Length=2300 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 526 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 583 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 584 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 643 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 644 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 703 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 704 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 763 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 764 AAGTCCCTGCCCTTTGTA 781 >seq13899 Length=5161 Score = 158 bits (174), Expect = 2e-36 Identities = 164/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||| | Sbjct 5159 GCAATAACAGGTCTGTGATGCCCTTAGATGTACGGGGCTGCACGCGCACTACACTGACTG 5100 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || | || | | ||| ||||| |||| |||||| | | || | | ||||| Sbjct 5099 GCTCAGCATGTGCCTACCCTACGCCGGCAGGTGCGGGTAACCCGTTGAACCCCATTCGTG 5040 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | | |||||||||||| | | || ||||||| || |||||| ||| ||| Sbjct 5039 ATGGGGATTGGGGATTGCAATTATTCCCCAAGAATGAGGAATTCCCAGTAAGTGCGGGTC 4980 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||| ||| |||||||||||||||| Sbjct 4979 ATAAGCTTGCG----TTAAGTCCCTGCCCTTTGTA 4949 >seq4939 Length=37399 Score = 127 bits (140), Expect = 4e-27 Identities = 163/223 (73%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||| || |||| Sbjct 31487 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGTGCACTAC 31429 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | | ||| || || |||| | |||| | | || | Sbjct 31428 ACTGACTGGCTCAGCGTGTGCCTACCCTATGCTGGCAGGTGCGTGTAACCCGTTGAACCC 31369 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||| || ||| | |||||||||||| | | | ||| |||||| || |||||| Sbjct 31368 CATTTGTGATGAGGAACAGGGATTGCAATTATTCCCCATGAACAAGGAATTCCCAGTAAG 31309 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| | | ||| |||||||| ||||||| Sbjct 31308 TGCGGGTCATAAGCTTGTG----TTAAGTCCCTGCACTTTGTA 31270 >seq10391 Length=4239 Score = 116 bits (128), Expect = 7e-24 Identities = 184/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| ||| | |||| || | ||||| |||||||||||||||| Sbjct 2509 CTTCTTAGAGGGACTAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2452 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||| ||| || || |||||||| | || | || | Sbjct 2451 ATGCCCTTAGATGTCCGGGGGTGCATGCACGGTACACTGAGTGGCTCAGTGTGTGTCTAC 2392 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || || ||| | ||| || | | || | | ||||| ||||||| | | |||| Sbjct 2391 TCTATGCTGGCAGG-CGGGGGAACCCATTGAACCCCATTCGTGATGGGGATCGGGGATTG 2333 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | | |||| || | |||||| ||| ||||||||| ||| || Sbjct 2332 CAATTATTCCCCATGAGTGAGGCATTCGCAGTAAGTGCGGGTCATCAGCTTGCG----TT 2277 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||| |||| |||||| Sbjct 2276 AAGTCCTTGCCGTTTGTA 2259 >seq5046 Length=4847 Score = 116 bits (128), Expect = 7e-24 Identities = 184/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||||| | ||| ||| | ||| |||||| || |||||||||||| Sbjct 4025 CTTCTTAGAGGGACTAGTGT-TCA-GCC-ACCCAAGATTGAGGAAA--ACAGGTCTGTGA 4079 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||| ||| || || ||||||||| | || | || | | Sbjct 4080 TGCCCTTAGATGTCCGGGGCTGCATGCACGGTACACTGACTGGCTCAGTGTGTGCCTACT 4139 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || || || ||| | ||| || | | || | | ||||| ||||||| | ||||| Sbjct 4140 CTATGCTGGCAGG-CGGGGGAACCCATTGAACCCCATTCGTGATGGGGATCGGAGATTGC 4198 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| | | | | ||||| || | |||||| || ||||||||| ||| ||| Sbjct 4199 AATTATTACCCATGAGCGAGGCATTCGCAGTAAGTGCAGGTCATCAGCTTGCG----TTA 4254 Query 312 CGTCCCTGCCCTTTGTA 328 |||| |||| |||||| Sbjct 4255 AGTCCTTGCCGTTTGTA 4271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946836587776