Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq14460 104 4e-20 seq5046 104 4e-20 seq4939 95.1 2e-17 seq17876 78.8 2e-12 seq12746 77.0 5e-12 seq2193 73.4 6e-11 >seq14460 Length=1820 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1456 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1399 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1398 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1345 >seq5046 Length=4847 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2069 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2126 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2127 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2180 Score = 87.8 bits (96), Expect = 3e-15 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| |||||| | |||| | || | | |||| || || | Sbjct 1264 GTACGAGAGGAACCGCACG-TTCAGAC-ATGTGGTGTATGTGTTTTGCTGAGGAGCCAAT 1321 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 1322 GGGGCGAAGCTACCATCTGTGGGATCATGGCTGAACGCCTCTAAGTCAGAAT 1373 >seq4939 Length=37399 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 6521 GTAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 6578 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 6579 GGGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 6632 >seq17876 Length=1030 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| |||||| | |||| | || | | |||| || || | Sbjct 331 GTACGAGAGGAACCGCACG-TTCAGAC-ATGTGGTGTATGTGTTTTGCTGAGGAGCCAAT 274 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| | || ||||||||| |||||||||||||||| Sbjct 273 GGGGCGAAGCTACCATCTGTGGAATCATGGCTGAATGCCTCTAAGTCAGAAT 222 >seq12746 Length=1008 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || Sbjct 645 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAC 588 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||| ||| |||||||||||||||| |||||| Sbjct 587 GGGACAAAGCTACCATCTGTGGGATCATGACTGAACGCCTCTAAGTTGGAATCC 534 >seq2193 Length=758271 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || ||||| ||||||||||| |||||| | ||||||||||||| Sbjct 426052 TGGCTGAAGAGCCAATGGGGCGAACCTACCATCTGCGGGATTAGGAATGAACGCCTCTAA 426111 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 426112 GTCAGAATCC 426121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818895519488