Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq12656 141 1e-31 seq7359 141 1e-31 seq69957 140 5e-31 seq11819 129 9e-28 seq10543 127 3e-27 seq20093 93.3 6e-17 seq2268 77.0 5e-12 seq72734 73.4 6e-11 >seq12656 Length=41293 Score = 141 bits (156), Expect = 1e-31 Identities = 180/239 (75%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 351 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 408 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT----TCAAAG 116 |||||| | | || |||| |||| ||||||||||| |||| |||| | Sbjct 409 CTCGTTCATGGGGAATAATTACAATCCCTGATCCCCATCAC----AAATGGGGATCAATG 464 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGC 174 ||||||| || || |||| |||| | || | ||| ||| ||||||||| || | Sbjct 465 GGTTACCCGCACATGCCGGCAAAGGGTAGGCACATGCTGAG-ACAGTCAGTGTAGTGCAC 523 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||| | ||||||| |||||||||||||||||||||| ||||| || ||||| Sbjct 524 GTGCAGCCCTGGACATCTATGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 581 >seq7359 Length=110502 Score = 141 bits (156), Expect = 1e-31 Identities = 180/239 (75%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 8652 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 8709 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT----TCAAAG 116 |||||| | | || |||| |||| ||||||||||| |||| |||| | Sbjct 8710 CTCGTTCATGGGGAATAATTACAATCCCTGATCCCCATCAC----AAATGGGGATCAATG 8765 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGC 174 ||||||| || || |||| |||| | || | ||| ||| ||||||||| || | Sbjct 8766 GGTTACCCGCACATGCCGGCAAAGGGTAGGCACATGCTGAG-ACAGTCAGTGTAGTGCAC 8824 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||| | ||||||| |||||||||||||||||||||| ||||| || ||||| Sbjct 8825 GTGCAGCCCTGGACATCTATGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 8882 >seq69957 Length=1428 Score = 140 bits (154), Expect = 5e-31 Identities = 190/257 (74%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| | || ||| |||||| |||||| | Sbjct 1051 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-AGGAGCCGCACTTACTGGGAATT-C 994 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | || ||||||||| | ||||||||||||| ||||| | || Sbjct 993 CTCCTTCGTGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGTT 934 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| ||| ||| | || || ||| ||||||||||||||||| Sbjct 933 ACCAGCGCCTGCTGGCGTAGGGTAGGCACACGCTGAGC----CAGTGTAGCGCGCGTGCA 878 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| | |||||||| ||||||||||||||||||||| ||||| || |||| ||||| Sbjct 877 GCCCCGGACATCTAATGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGG-CTAAAT 820 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 819 GCCACTTGTCCCTCTAA 803 >seq11819 Length=53682 Score = 129 bits (142), Expect = 9e-28 Identities = 188/258 (73%), Gaps = 16/258 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||| | ||||| | | |||||| |||||| | Sbjct 34716 GTACAAAGGGCAGGGACTTA----ACGCAAGCCT-ATGACCCACACTTACTGGGAATT-C 34663 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 34662 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGTGTT 34603 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||| | ||||| ||| | || ||| || || ||| ||||||||| ||| || Sbjct 34602 ACCTGCACCTGCTGGCATA--TGGTAGGCACACGCTGAGC----CAGTGTAGCACGCATG 34549 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 | |||| | |||||||||||||||||||||||||||||| | ||| || |||||| || Sbjct 34548 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CACAATCTCGGGTGGCCGAA 34490 Query 238 AAGGCCATCTCCCTCGAA 255 | | | |||||| || Sbjct 34489 CATCACTTGTCCCTCTAA 34472 >seq10543 Length=111264 Score = 127 bits (140), Expect = 3e-27 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| || ||||||| || ||||||| ||||| | || ||| |||||| |||||| | Sbjct 2475 GTACAATGGACAGGGACTTAATCAACGCAAGCTT-AGGAGCCGCACTTACTGGGAATT-C 2532 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | || ||||||||| | ||||||||||||| ||||| | || Sbjct 2533 CTCCTTCGTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2592 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| ||| ||| | || || ||| ||||||||| ||||||| Sbjct 2593 ACCAGCGCCTGCTGGCGTAGGGTAGGCACACGCTGAGC----CAGTGTAGCACGCGTGCA 2648 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 2649 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2693 >seq20093 Length=20707 Score = 93.3 bits (102), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 30/211 (14%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| ||| |||||| |||||| | Sbjct 5119 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTTGGAATT-C 5066 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || ||||||||| | ||||||||||||| |||| || || Sbjct 5065 CTCGTTCGTGGGGAATAATTGCAATCCACGATCCCCATCACGAATGGGGTTCAGAGCGTA 5006 Query 121 CCCGGACCTGTCGGC-CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || || ||| || | || ||||| ||||||||||||||| Sbjct 5005 ---GG----GTAGGCACACGCTG--AGACT--------------GTGTAGCGCGCGTGCA 4969 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTG 210 |||| | ||||||||||||||| |||||||| Sbjct 4968 GCCCCGGACATCTAAGGGCATCCCAGACCTG 4938 >seq2268 Length=311617 Score = 77.0 bits (84), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 164 GTGTAGCGC-GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || || ||| |||||| |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 191777 GTCTAACGCTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 191835 Query 223 ACTTCCGTGGC 233 ||| ||||| Sbjct 191836 TCTTGGGTGGC 191846 >seq72734 Length=1281 Score = 73.4 bits (80), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | ||||| ||||| ||||| ||| |||||| |||| || Sbjct 293 GTACAAAGGGCAGGGAC----TTAACGCAAGCTT-ATGACACGCACTTACTGGGAA-TTG 346 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | || ||||||| | | |||||||||||| ||| || | | || Sbjct 347 CTCGTTCGTGGGGAATAATTGCAGTCCCCGATCCCCATCACGAATGGGATGCAACGGGTT 406 Query 120 ACCCGGACCTGTCGGCCAAGGTGA 143 || || ||||| | || |||||| Sbjct 407 ACTCGCACCTGCCAGCGTAGGTGA 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750692240510