Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq7359 89.7 3e-16 seq20093 80.6 1e-13 seq11819 71.6 8e-11 >seq7359 Length=110502 Score = 89.7 bits (98), Expect = 3e-16 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| ||| Sbjct 9181 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCAGGCGGGTCATGGGAATAACGCTGCCG 9240 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||| |||| ||||| ||| |||||||||||||||||||||||| || Sbjct 9241 CATCGCCAGTCAGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTTGA 9297 >seq20093 Length=20707 Score = 80.6 bits (88), Expect = 1e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 4609 AACCCAAAGACTTTGGTTTCACGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCAC 4550 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| | |||| ||| ||||| ||| |||||||||||||||||||| Sbjct 4549 ATCGCGAGTCAGCAACGTTTATGGTCGGAACTACGACGGTATCTGATCG 4501 >seq11819 Length=53682 Score = 71.6 bits (78), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC-- 58 |||||||||||||||| |||| || ||| |||| | | |||| || | || | ||| Sbjct 34193 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGTG-GTCATAAAGGGAATAACGCTG 34135 Query 59 CCG-ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||| | | |||||| |||| ||| |||||||||||||| ||||||||| || Sbjct 34134 CCGCATCACCTGACGGCATCATTTATGGTCGGAACTACGACGGTATCCGATCGTCTTTGA 34075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277931468460