Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq11819 167 4e-39
seq7359 165 1e-38
seq20093 102 1e-19
seq72734 82.4 1e-13
>seq11819
Length=53682
Score = 167 bits (184), Expect = 4e-39
Identities = 207/277 (75%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAG--- 94
|||| ||| ||| |||| || || | | | | | |||||||||||||||||||||
Sbjct 33792 ATGCTCTTAGCTGAGTGTCCCATGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGGAG 33851
Query 95 TGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTG 151
||||||||||||||| || | |||||| ||| |||||||| ||||||||| ||
Sbjct 33852 TGTTCAAAGCAGGCCCGAGCCCCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TG 33910
Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211
||||||||||||||||||||| | || | | |||||||| ||||| | ||||||
Sbjct 33911 CGGTTCTATTTTGTTGGTTTCG-GAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCA 33969
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271
| ||||| | | |||||||||||||||||| ||||| || | ||||||
Sbjct 33970 TTCGTATTGCACCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAA 34029
Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308
|| || ||||| |||||||||||||||| ||||||
Sbjct 34030 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGA 34065
>seq7359
Length=110502
Score = 165 bits (182), Expect = 1e-38
Identities = 206/278 (74%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 9580 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 9521
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| | | | |||||| ||||||||| ||||
Sbjct 9520 TCAAAGCAGGCCCAAGCCACCTGGATACCGCACCTAGAAATAATGGAATAGGACC-GCGG 9462
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 9461 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 9402
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 9401 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 9342
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 9341 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 9305
>seq20093
Length=20707
Score = 102 bits (112), Expect = 1e-19
Identities = 155/214 (72%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96
|||| ||| ||| |||| || | || ||| | | | |||||||||||||||||| ||
Sbjct 4070 ATGCTCTTAGCTGAGTGTCCCCGTGGGGCCCGAAGCGTTTACTTTGAAAAAATTAA--TG 4127
Query 97 TTCAAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAA-TAATAGAATAGGACGTG 151
||||||||||||| || | |||| ||| |||| |||| ||||||||| |
Sbjct 4128 TTCAAAGCAGGCCACGAGCCGCCTGGATACCGCAGCTAGGAAATAATGGAATAGGACC-G 4186
Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211
|| ||||||| ||||| ||| | |||| | | ||||||||| ||||| | ||||||
Sbjct 4187 CGATTCTATTATGTTGCTTTTTGGGACTGAGGCAATGATTAAGAGGGACGGCCGGGGGCA 4246
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
| ||||| | ||||||||||||| ||||
Sbjct 4247 TTCGTATTGCGCCGCTAGAGGTGAAATTCATGGA 4280
>seq72734
Length=1281
Score = 82.4 bits (90), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 18/214 (8%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96
|||| ||| ||| |||| || | || ||| | | | |||||||||||||||||| ||
Sbjct 1181 ATGCTCTTAGCTGAGTGTCCCCGTGGGGCCCGAAGCGTTTACTTTGAAAAAATTAA--TG 1124
Query 97 TTCAAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAA-TAATAGAATAGGACGTG 151
||||||||||||| || | |||| ||| |||| |||| ||||||||| |
Sbjct 1123 TTCAAAGCAGGCCCCGAGCCGCCTGGATACCGCAGCTAGGAAATAATGGAATAGGACC-G 1065
Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211
|| ||||||| ||||| ||| |||| ||||||| ||||| | ||||||
Sbjct 1064 CGATTCTATTATGTTGCTTTTCGGGAC--------TGATTAAGAGGGACGGCCGGGGGCA 1013
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
| ||||| | ||||||||||||| ||||
Sbjct 1012 TTCGTATTGCGCCGCTAGAGGTGAAATTCATGGA 979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913557087872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |