Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11819 167 4e-39 seq7359 165 1e-38 seq20093 102 1e-19 seq72734 82.4 1e-13 >seq11819 Length=53682 Score = 167 bits (184), Expect = 4e-39 Identities = 207/277 (75%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAG--- 94 |||| ||| ||| |||| || || | | | | | ||||||||||||||||||||| Sbjct 33792 ATGCTCTTAGCTGAGTGTCCCATGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGGAG 33851 Query 95 TGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTG 151 ||||||||||||||| || | |||||| ||| |||||||| ||||||||| || Sbjct 33852 TGTTCAAAGCAGGCCCGAGCCCCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TG 33910 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 ||||||||||||||||||||| | || | | |||||||| ||||| | |||||| Sbjct 33911 CGGTTCTATTTTGTTGGTTTCG-GAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCA 33969 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | | |||||||||||||||||| ||||| || | |||||| Sbjct 33970 TTCGTATTGCACCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAA 34029 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || || ||||| |||||||||||||||| |||||| Sbjct 34030 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGA 34065 >seq7359 Length=110502 Score = 165 bits (182), Expect = 1e-38 Identities = 206/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 9580 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 9521 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| | | | |||||| ||||||||| |||| Sbjct 9520 TCAAAGCAGGCCCAAGCCACCTGGATACCGCACCTAGAAATAATGGAATAGGACC-GCGG 9462 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 9461 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 9402 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 9401 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 9342 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 9341 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 9305 >seq20093 Length=20707 Score = 102 bits (112), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| || | || ||| | | | |||||||||||||||||| || Sbjct 4070 ATGCTCTTAGCTGAGTGTCCCCGTGGGGCCCGAAGCGTTTACTTTGAAAAAATTAA--TG 4127 Query 97 TTCAAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAA-TAATAGAATAGGACGTG 151 ||||||||||||| || | |||| ||| |||| |||| ||||||||| | Sbjct 4128 TTCAAAGCAGGCCACGAGCCGCCTGGATACCGCAGCTAGGAAATAATGGAATAGGACC-G 4186 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 || ||||||| ||||| ||| | |||| | | ||||||||| ||||| | |||||| Sbjct 4187 CGATTCTATTATGTTGCTTTTTGGGACTGAGGCAATGATTAAGAGGGACGGCCGGGGGCA 4246 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | ||||||||||||| |||| Sbjct 4247 TTCGTATTGCGCCGCTAGAGGTGAAATTCATGGA 4280 >seq72734 Length=1281 Score = 82.4 bits (90), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 18/214 (8%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| || | || ||| | | | |||||||||||||||||| || Sbjct 1181 ATGCTCTTAGCTGAGTGTCCCCGTGGGGCCCGAAGCGTTTACTTTGAAAAAATTAA--TG 1124 Query 97 TTCAAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAA-TAATAGAATAGGACGTG 151 ||||||||||||| || | |||| ||| |||| |||| ||||||||| | Sbjct 1123 TTCAAAGCAGGCCCCGAGCCGCCTGGATACCGCAGCTAGGAAATAATGGAATAGGACC-G 1065 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 || ||||||| ||||| ||| |||| ||||||| ||||| | |||||| Sbjct 1064 CGATTCTATTATGTTGCTTTTCGGGAC--------TGATTAAGAGGGACGGCCGGGGGCA 1013 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | ||||||||||||| |||| Sbjct 1012 TTCGTATTGCGCCGCTAGAGGTGAAATTCATGGA 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913557087872