Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15417 140 1e-30 seq7359 140 1e-30 seq11819 136 2e-29 seq7917 136 2e-29 seq118864 122 4e-25 seq44 113 2e-22 seq1406 100 1e-18 seq553 91.5 6e-16 seq6820 80.6 1e-12 >seq15417 Length=25066 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||||||||||||| ||||||| ||||| |||| |||| Sbjct 1573 GAGCACGAGCACACGTGTTAGGACCCGAAAGATGTTGAACTACGCCTGGGCAGGGCGAAG 1514 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| | ||| | Sbjct 1513 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTAGTCCGACC 1454 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 1453 TGGGTATAGGGGCGA 1439 >seq7359 Length=110502 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 202 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGGGAAGCCAGAGGAAACTCTG 143 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || || ||| ||| |||||||||| ||||| | ||||||||||||||| Sbjct 142 GTGGAGGTCCGTAGTGGTCCTGACGTGCAAATCAGTCGTCCGACCTGGGTATAGGGGCGA 83 Score = 118 bits (130), Expect = 4e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 || ||| |||| ||||||||||||| | || || | |||||||| | ||||| ||||||| Sbjct 5650 GAATCGGGTTGCTTGGGAATGCAGCCCAAAGTGTGTGGTAAATTCCATCTAAGGCTAAAT 5591 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 5590 ACTGGCACAAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 5531 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 5530 AGAGAGTTCAAGAGGGCGTGAAA 5508 >seq11819 Length=53682 Score = 136 bits (150), Expect = 2e-29 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 38892 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGTGCAGGGCGAAGCCAGAGGAAACTCTG 38951 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| || || ||| ||| | ||||||||| || || || ||||||||||||| Sbjct 38952 GTGGAGGTCCGTAGTGGTCCTGACATGCAAATCGGTCATCCAACCTGGGTATAGGGGC 39009 Score = 75.2 bits (82), Expect = 5e-11 Identities = 114/160 (71%), Gaps = 8/160 (5%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || ||||| | | ||||| ||||||| Sbjct 37704 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCCGGTGGTAAGCTCCATCTAAGGCTAAAT 37763 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||||| | | ||||| ||||| |||||| | Sbjct 37764 ACCGGCAGGAGACCGATAG---TCAAGTACCTTAAGGGAAAGTTGAAA---ACTTTG--A 37815 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| || || || | | ||| ||| | ||| || || Sbjct 37816 AGAGATTTCAAGAGAGCATAAAACCGTTAAGAGGTAAACG 37855 >seq7917 Length=101314 Score = 136 bits (150), Expect = 2e-29 Identities = 102/120 (85%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 23431 TGTTAGGACCCGAGAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGAAAACTCTG 23490 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||| | | ||| | ||||||||||||||| Sbjct 23491 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATTGGTTGTCCGACCTGGGTATAGGGGCGA 23550 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 21433 GAGTCATGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 21492 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||| | || | ||||| ||||| | |||||| | Sbjct 21493 ACCGGCACGAGACCGATAGTCAACAAGAACTGTAAGGGAAAGTTGAAAGGAACTTTGAAG 21552 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 21553 AGAGAGTTCAAGAGGGCGTGAAA 21575 >seq118864 Length=691 Score = 122 bits (134), Expect = 4e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||||||| |||| |||| ||||||||| |||| Sbjct 166 TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGTCAGAGGAAAATCTG 225 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||| | ||| || ||| ||||||||||| ||||| | |||||||||||| Sbjct 226 GTGGAGGTCTGTAGCAGTCCTGACGTGCAAATCGGTCGTCTGACCTGGGTATAGGGG 282 >seq44 Length=1399699 Score = 113 bits (124), Expect = 2e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 399858 TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTC 399917 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| ||| || ||| | ||||||||| || || | |||||||| ||| || Sbjct 399918 GTGGAGGTCTATAGCAGTCCTGACATGCAAATCGGTCATCTGACCTGGGTATAAGGGTGA 399977 >seq1406 Length=405247 Score = 100 bits (110), Expect = 1e-18 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 371725 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 371784 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||| | || ||| ||| ||||||||| || || | || ||||| |||| Sbjct 371785 GTGAAGGTCTGTAGTGGTCCTGAAGTGCAAATCAGTCATCTGACCTGAGTATAAGGGC 371842 >seq553 Length=615063 Score = 91.5 bits (100), Expect = 6e-16 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||| | |||||||||||||||| ||||| || |||| | Sbjct 524382 GAGCATGAGCACAA-TGTTAGGACTCAAAAGATGGTGAACTATTCCTGAGAAGAGTGATG 524324 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | || || ||| ||||| || | || || || Sbjct 524323 CCAGAGGAAACTCTGGTGGAGGTCTGTAGTAGTCCTGATGTGCAGATTGGTCATCTGATC 524264 Query 669 TGGGT 673 ||||| Sbjct 524263 TGGGT 524259 >seq6820 Length=122973 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 || |||| |||||| |||||||||||||| || ||| |||| |||||||||||||| Sbjct 73140 AGGTGTTAGGACCCAAAAGATGGTGAACTGTGGCTGGGCAGGGCAAAGCCAGAGGAAACA 73081 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||| | || ||| ||| | || || | ||| ||| Sbjct 73080 CTGGTGGAGGTCCTTAGAGGTCCTGACATGTGAACCCATCATCA 73037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076149424700