Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq12656 161 2e-37 seq7359 161 2e-37 seq69957 152 1e-34 seq10543 143 5e-32 seq11819 129 1e-27 seq20093 98.7 2e-18 seq2268 82.4 1e-13 seq72734 80.6 5e-13 >seq12656 Length=41293 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 607 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 550 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| ||||||| | |||| ||||| || |||||||||| | || | || | | Sbjct 549 ATGCCCATAGATGTCCAGGGCTGCACGTGCACTACACTGACTGTCTCAGCATGTGCCTAC 490 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||||| | || |||||| | | | | | | ||| ||||||| | |||| Sbjct 489 CCTTTGCCGGCATGTGCGGGTAACCCATTGATCCCCATTTGTGATGGGGATCAGGGATTG 430 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||||| ||| ||||| ||| || |||||| Sbjct 429 TAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGATT 370 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 369 AAGTCCCTGCCCTTTGTA 352 >seq7359 Length=110502 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 8908 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 8851 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||| ||||||| | |||| ||||| || |||||||||| | || | || | | Sbjct 8850 ATGCCCATAGATGTCCAGGGCTGCACGTGCACTACACTGACTGTCTCAGCATGTGCCTAC 8791 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||||| | || |||||| | | | | | | ||| ||||||| | |||| Sbjct 8790 CCTTTGCCGGCATGTGCGGGTAACCCATTGATCCCCATTTGTGATGGGGATCAGGGATTG 8731 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| || |||||| ||| ||||| ||| || |||||| Sbjct 8730 TAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGATT 8671 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 8670 AAGTCCCTGCCCTTTGTA 8653 >seq69957 Length=1428 Score = 152 bits (168), Expect = 1e-34 Identities = 191/258 (74%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 799 CTTTTTAGAGGGACAAGTGGCATTTAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 856 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| |||||||| | |||| ||||||||||||||||| | ||| | || | | Sbjct 857 ATGCCATTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCTCAGC----GTGTGCCTAC 912 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| | ||| ||||| | | || | | ||||| ||||||| | | |||| Sbjct 913 CCTACGCCAGCAGGCGCTGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 972 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | || ||||||| || |||||| ||| || | ||| ||||||||| Sbjct 973 CAATTATTCCCCACGAAGGAGGAATTCCCAGTAAGTGCGGCTCCTAAGCTTGCGTTGATT 1032 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1033 AAGTCCCTGCCCTTTGTA 1050 >seq10543 Length=111264 Score = 143 bits (158), Expect = 5e-32 Identities = 193/265 (73%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 |||| ||| |||||||||| | ||| |||| | | || ||||| ||||||||| Sbjct 2733 CGCCAACTTTTTAGAGGGACAAGTGGCATTCAACCACCCG--AGATTGAG-CAATAACAG 2677 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||| | |||| ||||||| ||||||||| | || || | Sbjct 2676 GTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGGC----TCAGCGTG 2621 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | | | ||| ||| | ||| ||||| | | || | | ||||| ||||||| | Sbjct 2620 TGCCTACCCTACGCCAGCAGGCGCTGGTAACCCGTTGAACCCCATTCGTGATGGGGATCG 2561 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||||| | | || ||||||| || |||||| ||| || | ||| || Sbjct 2560 GGGATTGCAATTATTCCCCACGAAGGAGGAATTCCCAGTAAGTGCGGCTCCTAAGCTTGC 2501 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| ||||||| || ||||| Sbjct 2500 GTTGATTAAGTCCCTGTCCATTGTA 2476 >seq11819 Length=53682 Score = 129 bits (142), Expect = 1e-27 Identities = 158/215 (73%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| ||| ||| ||||||||| | Sbjct 34509 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCATGCGTGCTACACTGGC-- 34566 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | | | | ||| | |||| ||||| | || | | ||||| Sbjct 34567 --TCAGCGTGTGCCTACCATATGCCAGCAGGTGCAGGTAACACATTGAACCCCATTCGTG 34624 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | | |||||||||||| | | | |||||||||| || |||||| | | ||| Sbjct 34625 ATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTC 34684 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||| ||| |||||||||||||||| Sbjct 34685 ATAGGCTTGCG----TTAAGTCCCTGCCCTTTGTA 34715 >seq20093 Length=20707 Score = 98.7 bits (108), Expect = 2e-18 Identities = 145/208 (70%), Gaps = 27/208 (13%) Strand=Plus/Plus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180 |||||||| ||||||||||||||| | |||| ||||||||||||||| | | ||| Sbjct 4938 CAGGTCTGGGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACAGTCTCAGC---- 4993 Query 181 GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 | || | | ||| || |||| || | | ||||| |||||| Sbjct 4994 GTGTGCCTACCCTACGC-------TCTG------------AACCCCATTCGTGATGGGGA 5034 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | | | |||||||||||| | | |||||||||| || |||||| ||| ||||| ||| Sbjct 5035 TCGTGGATTGCAATTATTCCCCACGAACGAGGAATTCCAAGTAAGTGCGGGTCATAAGCT 5094 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| |||||||||||||||| Sbjct 5095 TGCG----TTAAGTCCCTGCCCTTTGTA 5118 >seq2268 Length=311617 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 191872 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 191815 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGC-GCGCTACAC 167 |||||||||||||| | |||| |||||| ||| || || Sbjct 191814 ATGCCCTTAGATGTCCGGGGCTGCACGCAGCGTTAGAC 191777 >seq72734 Length=1281 Score = 80.6 bits (88), Expect = 5e-13 Identities = 78/100 (78%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | | |||||||||| | | |||||| ||| || |||||| || Sbjct 389 TCGTGATGGGGATCGGGGACTGCAATTATTCCCCACGAACGAGCAATTCCCAGTAAGTGC 330 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||| ||||| | |||||||||||||||| Sbjct 329 GTGTCATAAGCTTGCGTTAA----GTCCCTGCCCTTTGTA 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945499643392