Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7359 315 2e-83 seq11819 291 2e-76 seq11257 203 1e-49 seq30496 170 6e-40 seq20093 170 6e-40 seq24040 132 1e-28 seq15603 105 2e-20 seq4973 87.8 5e-15 seq79015 84.2 7e-14 seq18005 75.2 3e-11 seq13795 75.2 3e-11 seq6554 75.2 3e-11 >seq7359 Length=110502 Score = 315 bits (348), Expect = 2e-83 Identities = 407/557 (73%), Gaps = 64/557 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||| ||| | || | |||||| ||||||| ||||| ||||||||||||| Sbjct 9777 ACTCATTCCAATAACAGGGCCTAGAAAGAGTCCTGTAT---TATTTTTTGTCACTACCTC 9833 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| |||||||||||| | |||||||||||||||||||||||||||| ||| Sbjct 9834 CCCAGGTCGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 9893 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||||||||| |||||| ||||||||| ||| || | |||||||||| Sbjct 9894 CTCAGGCTCCCTCTCCGGAATCAAACCCTGATTCCCCGTCACCTGTGGTCACCATGGTAG 9953 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||| |||||||| |||||||| || ||||| | |||| | | | Sbjct 9954 GCACGGCGACTACCATCAAAAGTTGACAGGGCAGACGTTCGAATGGGTCGTCGCTGCCAC 10013 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||| ||| || |||| Sbjct 10014 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCATCAAAGCCGCTGGCGCCCGGCCC 10073 Query 287 ---CGAAGGGC------------------GTTGGTTTTTTATCTAATAAATACAC---CC 322 | |||| ||||| |||| || | |||||| ||| | Sbjct 10074 CCGCCCGGGGCCAGGAGGAAGCTGACCAGGTTGG-TTTTGATATGATAAATGCACGCATC 10132 Query 323 CTTCCGAAGTCGGGGTT--------TTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 | || | | |||| | | ||||||||||||||||||||||||| |||| Sbjct 10133 CCCCCCACGAGGGGGGTCAGCGCCCATCGGCATGTATTAGCTCTAGAATTACCA--GTTA 10190 Query 375 TCCATGT-----AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| || || | | | | |||| ||| ||||||||||||||||||||||||| Sbjct 10191 TCCAAGTAAGAGAGAAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 10250 Query 430 AGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 10251 AGTTTCACTGTACCAGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 10308 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 10309 CATATG-CTACTGGCAG 10324 >seq11819 Length=53682 Score = 291 bits (322), Expect = 2e-76 Identities = 407/561 (73%), Gaps = 70/561 (12%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||| ||||| | | || |||||||| ||||||| | ||| | |||||||| | Sbjct 33594 ACTCATTCTAATTATAGGGCCTCAAAAGAGTCCTGTAT---TGTTTTTCATCACTACCCC 33538 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||||| | |||| |||||||| |||| |||||||||||| Sbjct 33537 CCCGGGTCGGGAGTGGGTAATTTGCACACCTGATGCCTTCCCTGGAAATGGTAGCCGTTT 33478 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||| |||||| ||||||||||| |||| || | |||||| |||||||||| Sbjct 33477 CTCAGGCTCTCTCTCCAAAATCGAACCCTGATTCTCCATCACCCGTGTTCACCATGGTAG 33418 Query 182 GCCACTATC--CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | |||||||| |||| |||||||||||| || ||||| |||||||| Sbjct 33417 GC-AC-AGCGACTACCATCAAAAGCTGATAGGGCAGACGTTCGAATGGGTCATCGCCG-- 33362 Query 240 TCAA---GGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------GGAGCCCCG 288 ||| || | || ||| | | | ||||| || ||||||| || ||||| Sbjct 33361 CCAAGGGGGGCGTGTGATCAGCCTGAGGTTATCTAGAGTCACCAAAGCCACGGGCCCCCG 33302 Query 289 ---------AAGGGC------------------GTTGGTTTTTTATCTAATAAATACACC 321 ||||| ||||| |||| |||| |||||| ||| Sbjct 33301 CCCCCCAGCCAGGGCCGGGAGGAAGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACA 33243 Query 322 CCTTCCGAAGTC----GGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 | | || | | ||||| | |||||||||||||||||||||||||| Sbjct 33242 CATCCCCCACGCGAGGGGGGTCAGCACCCGTCGGCATGTATTAGCTCTAGAATTACCACA 33183 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| ||| | || | | |||||| ||| |||| ||||||||||||||| Sbjct 33182 GTTATCCAAATAGGAGAGGAGCGAGCGATCAAAGGAACCATAAGTGATTTAATGAGCCAC 33123 Query 426 TCGCAGTTTCACTGTA-TAG-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 | ||||||| |||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 33122 TTGCAGTTTTACTGTACCAGCCGTGC--ATACTTAGACATGCATGGCTTAATCTTTGAGA 33065 Query 484 CAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||| Sbjct 33064 CAAGCATATG-CTACTGGCAG 33045 >seq11257 Length=106102 Score = 203 bits (224), Expect = 1e-49 Identities = 200/256 (78%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||||||| | || || || ||||||| ||||| | |||||||||||| Sbjct 106043 ACTCATTCCAATTACAGGGCCTTGAA-AGTCCTGTAT---TATTTTTCGTCACTACCTCC 105988 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || || ||| | |||||||||||||||||||||||||||||||||| |||| | |||| Sbjct 105987 ACGGGTGTGGAGTAGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTTGTAGGCCTTTC 105928 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| ||||||||| |||||| | || || Sbjct 105927 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCAC-------GG 105875 Query 183 CCA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 | | | | | ||||||||||| || ||||||||| || |||| | |||||| | | Sbjct 105874 CGATCGAGACCACCATCGAAAGATGGTAGGGCAGACGTTGAAATGGGTCGTCGCCGCCAC 105815 Query 242 AAGGCCATGCGATTCG 257 || | |||||| || Sbjct 105814 GGGGACGTGCGATCCG 105799 Score = 172 bits (190), Expect = 2e-40 Identities = 169/214 (79%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||||||| | || || || ||||||| ||||| | |||||||||||| Sbjct 100022 ACTCATTCCAATTACAGGGCCTTGAA-AGTCCTGTAT---TATTTTTCGTCACTACCTCC 99967 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || ||| ||| | |||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 99966 ACGGGTCTGGAGTAGGTAATGTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGGCGTTTC 99907 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||| |||||||| ||| | ||||||| | | |||| | || | | Sbjct 99906 TCAGGCTCCCTCTACGGAATCGTACCTTGATTCCCCTTCAACCGTGGTCAC----GGCGA 99851 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || | | | |||||||||| ||||||||||| Sbjct 99850 CCGCGA--CCACCATCGAAA---GATAGGGCAGA 99822 Score = 170 bits (188), Expect = 6e-40 Identities = 169/215 (79%), Gaps = 13/215 (6%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAA-AGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | ||| | |||| || ||| ||||| | ||||||||||| Sbjct 100457 ACTCATTCCAATTACAGGGCCCCGAGAGAGTTCTTTAT---TATTTTTCGTCACTACCTC 100401 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | || ||| ||| | |||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 100400 CACGGGTCTGGAGTAGGTAATGTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGGCGTTT 100341 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||| || ||||| ||| | ||||||| | |||||| | || | | Sbjct 100340 CTCAGGCTCCCTCTACGAAATCGTACCTTGATTCCCCTTCACCCGTGGTCAC----GGCG 100285 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || | | | |||||||||| ||||||||||| Sbjct 100284 ACCGCGA--CCACCATCGAAA---GATAGGGCAGA 100255 >seq30496 Length=7077 Score = 170 bits (188), Expect = 6e-40 Identities = 179/235 (76%), Gaps = 19/235 (8%) Strand=Plus/Plus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||||| ||||| | |||||||||||| || ||| ||| | ||||||||||||| Sbjct 4186 AGTCCTGTAT---TATTTTTCGTCACTACCTCCACGGGTCTGGAGTAGGTAATTTGCGCG 4242 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| Sbjct 4243 CCTGCTGCCTT------ATGTTGTAGGCCTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 4296 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGT--AGGCCACTATC--------CTACCATCG 199 | ||||||||| |||||| | || | | || |||| ||| | ||||||| Sbjct 4297 TGATTCCCCGTCACCCGTGGTCACGGCGATCGAGACCACCATCGAAAGAGACCACCATCG 4356 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 |||| |||||||||||| || ||||| | |||||| | | || | |||||| Sbjct 4357 AAAGATGATAGGGCAGACGTTGAAATGAGTCGTCGCCGCCACGGGGACGTGCGAT 4411 >seq20093 Length=20707 Score = 170 bits (188), Expect = 6e-40 Identities = 192/253 (76%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| ||||||||||| Sbjct 3909 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTAT---TATTTTCCGTCACTACCTC 3853 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | || || ||| | |||||||||||||||||||||||||||| |||||| | |||| Sbjct 3852 CACGGTTCTGGAGTAGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTG--ATGTGTTT 3795 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||| ||||||||||||| ||||||||| || | | | | || | Sbjct 3794 CTCAGGCTCCCTCTAAGGAATCGAACCCTGATTCCCCGTCACACATGGTCA----GGGCG 3739 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||| | | ||||||||||| |||||||||||| || |||| | | |||| | | Sbjct 3738 ACCA--AGACCACCATCGAAAGATGATAGGGCAGACGTTGAAATGGGTCGTGGCCGCCAC 3681 Query 242 AAGGCCATGCGAT 254 || | |||||| Sbjct 3680 GGGGACGTGCGAT 3668 >seq24040 Length=10277 Score = 132 bits (146), Expect = 1e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||||| || | ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 6645 CCCGTGTCTTGAGTAGGTAATTTGCGCGCCTGCTGCCTTCCTTGCATGTGGTAGGCGTTT 6586 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||| | |||||| ||||| ||||||| | || ||| Sbjct 6585 CTCAGGCTCCCTCTACAGAATCGTACCCTGATTCCCCTTCACACGT 6540 Score = 129 bits (142), Expect = 2e-27 Identities = 92/106 (87%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||||| || | ||||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 6828 CCCGTGTCTTGAGTAGGTAATTTGCGCGCCTGCTGCCTTCCTAGCATGTGGTAGGCGTTT 6769 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||| | |||||| ||||| ||||||| | || ||| Sbjct 6768 CTCAGGCTCCCTCTACAGAATCGTACCCTGATTCCCCTTCACACGT 6723 >seq15603 Length=24276 Score = 105 bits (116), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 5/123 (4%) Strand=Plus/Plus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 ||||||||||| ||||||||| ||||||||||||| |||| ||||||||||| ||| Sbjct 5393 TGCCTTCCTTGCATGTGGTAGGCGTTTCTCAGGCTAACTCTAAGGAATCGAACC--GATT 5450 Query 155 CCC--CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG-TTGATAGG 211 ||| ||| | |||| | |||||||||||| ||||||||||||| |||||||| Sbjct 5451 CCCGTCGTCATCCGTGGTCACCATGGTAGGCATGGCGACTACCATCGAAAGATTGATAGG 5510 Query 212 GCA 214 ||| Sbjct 5511 GCA 5513 >seq4973 Length=170814 Score = 87.8 bits (96), Expect = 5e-15 Identities = 120/163 (74%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||| | | || |||| || ||||| | || || || | | |||| Sbjct 108105 ACTCATTCCAATTATAGGGCCTCAAAGGAATCCTGTGTG-GTTTTCATCGCTGC--CCTC 108049 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || |||| ||||||||||| ||| |||||| ||||||||||| ||| | || Sbjct 108048 CCAG-GTTGGGAGAGGGTAATTTGCTCGCGTGCTGCGTTCCTTGGATGGAGTACTAGCTT 107990 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||| ||||| | ||| |||||| |||| || | ||| Sbjct 107989 ATCAGGCTTCCTCTGCAGAAATGAACCCAGATTCTCCATCACC 107947 >seq79015 Length=1087 Score = 84.2 bits (92), Expect = 7e-14 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 ||| |||| ||| |||||||||||||||||||||| ||||| ||||||| | || Sbjct 455 CTACCAAAGGAACCATAACTGATTTAATGAGCCATTTACAGTTCCACTGTA-CCAGGCCT 513 Query 451 -TATACTTAGACATGCATGGCTTAATCTT-TGAGACAAGC 488 | ||||||||||| |||||||||||||| |||||||| Sbjct 514 GTGTACTTAGACATACATGGCTTAATCTTAAAAGACAAGC 553 >seq18005 Length=17377 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/122 (75%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTG---TATCAGTATTTA-----TTGTC 53 |||||||||||||||| | | | |||||| |||| | | | |||||| ||||| Sbjct 9234 ACTCATTCCAATTACAGGGCATCGAAAGAGTCCTGAATTGTTACTATTTATTTTTTTGTC 9175 Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 ||||| ||||| ||| ||| ||| |||||| | ||||| ||| ||||||||| || | Sbjct 9174 ACTACTTCCCCAGGTCAGGAGTGGATAATTTACATGCCTGTTGCTTTCCTTGGACATGAT 9115 Query 114 AG 115 || Sbjct 9114 AG 9113 >seq13795 Length=33267 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/122 (75%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTG---TATCAGTATTTA-----TTGTC 53 |||||||||||||||| | | | |||||| |||| | | | |||||| ||||| Sbjct 17020 ACTCATTCCAATTACAGGGCATCGAAAGAGTCCTGAATTGTTACTATTTATTTTTTTGTC 16961 Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 ||||| ||||| ||| ||| ||| |||||| | ||||| ||| ||||||||| || | Sbjct 16960 ACTACTTCCCCAGGTCAGGAGTGGATAATTTACATGCCTGTTGCTTTCCTTGGACATGAT 16901 Query 114 AG 115 || Sbjct 16900 AG 16899 >seq6554 Length=127592 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/122 (75%), Gaps = 8/122 (7%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTG---TATCAGTATTTA----TTGTCA 54 |||||||||||||||| | | |||||| |||| | | |||||||| |||||| Sbjct 105310 ACTCATTCCAATTACAGGGCATTGAAAGAGTCCTGAATTGTTAGTATTTATTTTTTGTCA 105251 Query 55 CTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 |||| ||||| ||| ||| ||| |||||| | ||| || ||| |||||||| || || Sbjct 105250 CTACTTCCCCAGGTCAGGAGTGGATAATTTACACGCTTGTTGCTATCCTTGGACATGATA 105191 Query 115 GC 116 || Sbjct 105190 GC 105189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507688620544