Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7635 107 2e-18 seq103498 98.7 8e-16 seq2256 89.7 4e-13 >seq7635 Length=151111 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| |||| || Sbjct 110280 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCACTTGATCGTTCCCAGGTTCTTCTG 110339 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 110340 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 110399 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 110400 AGACTCAATGATGGCATACCAAAG 110423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||||||||| || | |||||||| || || || || ||||||| || || || || | Sbjct 100007 CTCCTTGGCCAGGTCACAGCTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAAGATTTG 100066 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813 ||| ||| | ||||| ||||| | || ||| | |||||||| ||||| | Sbjct 100067 CTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGG-ATATCTCATCAGGATAAAAGCAT 100125 Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||||||||||| || ||||| || ||||||||||| || Sbjct 100126 CTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGCG 100165 >seq103498 Length=782 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 605 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 546 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 545 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 499 >seq2256 Length=312150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||||||||| ||| | || | |||| ||||| || Sbjct 308484 GGTATACTCTACTATTTCTGTGCACAGATTGCTGTATTTGATCCTTCCCAGGTTCTGCTG 308543 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||| | | |||||||| || | ||||| || Sbjct 308544 GTTGCTCTTCCGATTACAGGAATCTTTGCAGAGTATGTACGGGGTACGTGTCTCTGTCTG 308603 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| |||||| Sbjct 308604 AGACTCAATGATGGCAGACCAAAG 308627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396698190044960