Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq773 174 2e-41 seq1 174 2e-41 seq126 105 1e-20 seq219 84.2 3e-14 >seq773 Length=81384781 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 33529608 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 33529551 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 33529550 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 33529491 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 33529490 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 33529431 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 33529430 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33529378 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 33531188 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 33531131 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 33531130 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 33531071 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 33531070 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 33531011 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 33531010 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33530958 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 33532596 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 33532539 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 33532538 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 33532479 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 33532478 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 33532419 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 33532418 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33532366 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 33533680 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 33533623 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 33533622 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 33533563 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 33533562 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 33533503 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 33533502 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33533450 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 33534682 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 33534625 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 33534624 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 33534565 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 33534564 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 33534505 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 33534504 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33534452 Score = 138 bits (152), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 26 CGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAAT 85 ||| ||||| ||||| ||| |||||| |||||| ||||||| | | || ||||||||| Sbjct 33526171 CGCAAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAAT 33526114 Query 86 GATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGAT 144 | ||||||||||||| ||||| | ||||||| |||| |||| ||| | Sbjct 33526113 CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAG 33526054 Query 145 AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 || || ||| |||||||||||||||||| |||| | |||||||||||||||||| Sbjct 33526053 GCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACA 33525994 Query 205 GACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||| ||||| || ||||| Sbjct 33525993 GACCTGTTATTG-CTCAATCTCGGGTGGC 33525966 Score = 107 bits (118), Expect = 3e-21 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || ||||||||| | ||||||||||||| ||||| | ||||||| ||||| | Sbjct 33527951 AATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCACCTGCC 33527892 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 || ||| | || || ||| |||||||||||||||||| |||| | |||||| Sbjct 33527891 AGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT 33527832 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||| ||||| || ||||| Sbjct 33527831 AAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 33527792 Score = 96.9 bits (106), Expect = 5e-18 Identities = 163/226 (72%), Gaps = 15/226 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| | |||||||| || | | || ||||| ||||| ||| |||||| |||| ||| Sbjct 33508177 GTAAATAGGGCAGGCACTTC----AGGCAAGCTT-ATGACCCGCACTTACT-GGAAATTC 33508124 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | |||||||||| || ||||| || || Sbjct 33508123 CTCCTTCATGGGGAATAATTGCAATCCCCCATCCCCATCATGAATGGGGTTCAACAGGTT 33508064 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAGACT--CGTTGAATACATCAGTGTAGCGCGCGT 176 ||||| ||| | |||| | | ||| | || ||| |||||||||||| ||| Sbjct 33508063 ACCCG--CCTCT--GCCACGTAGGGTAGGCATACGCTGAGCCAGTCAGTGTAGCGCACGT 33508008 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || | || | |||||||||||||||||||| ||||||||| ||||| Sbjct 33508007 GCAGTCCCGGACATCTAAGGGCATCACAGATCTGTTATTG-CTCAA 33507963 Score = 95.1 bits (104), Expect = 2e-17 Identities = 158/219 (72%), Gaps = 17/219 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||||||||||| | | || ||||| ||||| || |||||| |||| ||| Sbjct 33510838 GTACCTAGGGCAGGGACTTC----AGGCAAGCTT-ATGACCAGCACTTACT-GGAAATTC 33510785 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || | ||||| | ||||||||||||| ||||| || || Sbjct 33510784 CTCCTTCATGGGGAATA---GCAATCTCCCATCCCCATCACGAATGGGGTTCAACAGGTT 33510728 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||| ||| | |||| | | ||| || || ||| |||||||||||| ||| Sbjct 33510727 ACCCG--CCTCT--GCCACGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCACGT 33510672 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 || |||| | ||||||||||||||||||||||||||||| Sbjct 33510671 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 33510633 Score = 86.0 bits (94), Expect = 9e-15 Identities = 156/219 (71%), Gaps = 17/219 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||||||||||| | | || |||||| |||| || |||||| |||| ||| Sbjct 33535600 GTACCTAGGGCAGGGACTTC----AGGCAAGCTTG-TGACCAGCACTTACT-GGAAATTC 33535547 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| | | | || | ||||| | ||||||||||||| ||||| || || Sbjct 33535546 CTCCCTCATGGGGAATA---GCAATCTCCCATCCCCATCACGAATGGGGTTCAACAGGTT 33535490 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAGACTCGT--TGAATACATCAGTGTAGCGCGCGT 176 ||||| ||| | |||| | | ||| | | | ||| |||||||||||| ||| Sbjct 33535489 ACCCG--CCTCT--GCCACGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGCGCACGT 33535434 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 || |||| | ||||||||||||||||||||||||||||| Sbjct 33535433 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 33535395 >seq1 Length=228908639 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 49378166 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 49378223 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 49378224 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 49378283 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 49378284 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 49378343 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 49378344 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 49378396 >seq126 Length=135448346 Score = 105 bits (116), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | |||| ||||| ||||| || |||||| |||||| | Sbjct 24074381 GTACAAAGGGCAGGGACTTC----ACGCAAGCTT-ATGACCAGCACTTACTGGGAATT-C 24074434 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || |||||||| | ||| |||| | | | ||||| || || Sbjct 24074435 CTCATTCATGGGGAAAAATTGCAAACCCCGATCACCATTGCCAATGAGGTTCAACAGGTT 24074494 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| | | ||| | || | ||| |||||||||||||||||| Sbjct 24074495 ACCCACATCTGCCACATAGGGT-AGGCACATGCTGAGCCAGTCAGTGTAGCGCGCGTGCT 24074553 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||| ||||||||||||||||||||||||| ||||| || Sbjct 24074554 GCCCTGGACATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 24074598 Score = 105 bits (116), Expect = 1e-20 Identities = 165/226 (73%), Gaps = 15/226 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| ||||||||||| | | || ||||| ||||| | | |||||| |||| ||| Sbjct 24077242 GTACATAGGGCAGGGACTTC----AGGCAAGCTT-ATGACCCACACTTACT-GGAAATTC 24077295 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | ||||||||||||| ||||| || || Sbjct 24077296 CTCCTTCATGGGGAATAATTGCAATCCCCCATCCCCATCACGAATGGGGTTCAACAGGTT 24077355 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||| |||| | |||| | | ||| || || ||| |||||||||||||||| Sbjct 24077356 ACCC--ACCTCT--GCCATGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT 24077411 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || | || | || | ||||||||||||||| ||||||||| ||||| Sbjct 24077412 GCAGTCCCGGACGTGTAAGGGCATCACAGATCTGTTATTG-CTCAA 24077456 Score = 87.8 bits (96), Expect = 3e-15 Identities = 166/236 (70%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||| ||||| | |||| ||| | ||||| ||| |||||| |||||| | Sbjct 24073337 GTACAAAGGGCGGGGACTTC----ACGCAAGCCT-ATGACCCGCACTTACTGGGAATT-C 24073390 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | || ||||||||| | ||| |||| | ||| || | || ||| Sbjct 24073391 CTCATTCATGGGGAATAATTGCAATCCCCGATCACCATACCAATGGGGTTCAACAGGTTA 24073450 Query 121 CCCGGACCTGTCGGCCAAGGTGA-TAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177 ||| || ||| |||| | | ||| | | | ||| ||||||||| | |||| Sbjct 24073451 CCC--AC--GTCTGCCACGTAGGGTAGGCACATGCTGAGCCAGTCAGTGTAGGACTCGTG 24073506 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | ||||||||||||| |||||||| |||||| ||||| || ||||| Sbjct 24073507 CAGCCCCGGACATCTAAGGGCAGCACAGACCGCTTATTG-CTCAATCTCGGGTGGC 24073561 >seq219 Length=165317712 Score = 84.2 bits (92), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 |||||| || |||| || ||||| |||| ||| || |||||||||| ||||| | | | Sbjct 159159812 CAGGGATTTAATCAATGCAAGCTT-ATGATCCGCACTCACTAGGAATT-CCTCGGTCACG 159159869 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCT 129 || || |||||| | ||||||| ||||| | || || || ||||| | |||| Sbjct 159159870 GGGAATAACTGCAATCCCCAATCCCCAACACGAATAGGGTTGAAGAGTTTACCAGCACCT 159159929 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | ||| ||| || || | ||| | |||||| || ||||| |||| | | Sbjct 159159930 GCTGGCGTAGGGGAGGCACACACTGAGCCAGTTGGTGTAGTGCACGTGCAGCCCCAGATA 159159989 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||| | || ||||||||||||||||| | ||| ||| Sbjct 159159990 TCTATGAGCGTCACAGACCTGTTATTGAC-CAATCTT 159160025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751703420365