Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq860 149 3e-33 seq126 149 3e-33 seq377 131 7e-28 seq1 120 1e-24 seq638 107 8e-21 seq219 93.3 2e-16 seq23939 87.8 7e-15 seq187 80.6 1e-12 >seq860 Length=57935654 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 23665518 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 23665459 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 23665458 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 23665399 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 23666739 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 23666680 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 23666679 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 23666620 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 23666619 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 23666580 >seq126 Length=135448346 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 24203087 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 24203028 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 24203027 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 24202968 >seq377 Length=146757320 Score = 131 bits (144), Expect = 7e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||| ||||||| |||| |||||||||||| |||||| Sbjct 59962021 TGTTAGGACCCCAAAGATGGTGAACTGTGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 59962080 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || || || ||| |||||||||| |||||| | ||||||||||||||| Sbjct 59962081 GTGGAGGTCCGTTGCAGTGCTGTCGTGCAAATCCATCGTCCGACCTGGGTATAGGGGCGA 59962140 Score = 104 bits (114), Expect = 1e-19 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| || |||| ||| ||||||| |||||||||||||| | | ||||| Sbjct 47116688 GAGCATGAGCACAGGTGTTAGGAAATGAAAGATTGTGAACTATGCCTGGGCAAGATGAAG 47116747 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| |||||||||| |||| ||| ||| | |||||||||| ||| || Sbjct 47116748 CCAGAGGAAA--CTGGTGGAGGTCCGCAATGGTCCTGATGGGCAAATCGATTGTCCAACC 47116805 Query 669 TGGGTATAGGG 679 ||| ||||||| Sbjct 47116806 TGGATATAGGG 47116816 >seq1 Length=228908639 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| ||||| ||||||||| |||||| |||| ||||||||| Sbjct 121553848 GAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAG 121553789 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || ||| || ||| |||||||||| || || || ||||| Sbjct 121553788 GAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTG 121553729 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 121553728 TAGGGGCGA 121553720 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| ||||| ||||||||| |||||| |||| ||||||||| Sbjct 125281809 GAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAG 125281868 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || ||| || ||| |||||||||| || || || ||||| Sbjct 125281869 GAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGTCATCCAACCTGGGTG 125281928 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 125281929 TAGGGGCGA 125281937 Score = 80.6 bits (88), Expect = 1e-12 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 |||| ||||||||||||||||||||||||| || ||| || ||| |||||||||| | Sbjct 121552887 AGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCGGT 121552828 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | || || ||||| |||||||| Sbjct 121552827 CATCCAACCTGGGTGCAGGGGCGA 121552804 >seq638 Length=135235416 Score = 107 bits (118), Expect = 8e-21 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | | ||||||||||| Sbjct 85030996 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATTTAAAGCTAAAT 85031055 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 85031056 ACCGGCACGAGACTGATAGTAAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 85031115 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 85031116 AGAGAGTTCAAGAG 85031129 >seq219 Length=165317712 Score = 93.3 bits (102), Expect = 2e-16 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | | || |||||||||||| | || |||| |||||| | | |||| ||||||| Sbjct 106870404 GAGTTGGGCTGCTTGGGAATGCAGATGAAAGTGGGTGGTAAACTCCATCTATGGCTAAAT 106870463 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||||||| | | |||||| ||||||| |||| | || Sbjct 106870464 ACTGGCATGAGACCAATAGTCAACAAGTACCATAAGCGAAAGTTGAAAAGAACTTAGAAA 106870523 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 106870524 AGAGACTTCAAGAG 106870537 >seq23939 Length=2000 Score = 87.8 bits (96), Expect = 7e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || |||| |||| ||||||||||| ||| |||| ||||||||||||| Sbjct 372 TGTTAGGCACCAAAAGCTGGTAAACTATGCCTGGGCAGGA-GAAGTGAGAGGAAACTCTG 314 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| ||||||||||| || || || |||| |||||||| Sbjct 313 GTGGGGGTCTGTAGTGGTCCTGACGTGCAAATCGGTCATCTGATCTGGGCATAGGGGC 256 >seq187 Length=203093366 Score = 80.6 bits (88), Expect = 1e-12 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| || | |||||| |||||||| ||||||||| | | Sbjct 118449708 AAAGATGGTGAACTATGCCTGAGCAGAGGAAAGCCACAGGAAACT-TGGTGGAGGTTTGT 118449650 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 || ||| ||| ||||| |||| || || | |||||| Sbjct 118449649 AGTGGTCCTGATGTGCAGATCGGTCATCTGACCTGGGTA 118449611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079126749050