Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq126 347 2e-93 seq860 188 1e-45 seq931 109 9e-22 seq235 91.5 3e-16 seq187 87.8 3e-15 seq219 78.8 2e-12 >seq126 Length=135448346 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 24198165 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 24198224 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 24198225 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 24198284 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 24198285 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 24198344 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 24198345 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 24198404 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 24198405 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 24198458 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 24199246 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 24199305 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 24199306 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 24199365 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 24199366 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 24199425 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 24199426 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 24199485 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 24199486 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 24199539 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 24200149 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 24200208 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 24200209 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 24200268 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 24200269 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 24200328 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 24200329 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 24200388 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 24200389 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 24200442 Score = 214 bits (236), Expect = 3e-53 Identities = 182/222 (82%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACGGTCATCA-GTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | |||||||| | | || ||||| | |||||||||||||||||||||| Sbjct 24191560 CTGAGCAGGATTACCATGGCAACAACACACATCACGGAGGGTAAAACTAACCTGTCTCAC 24191619 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 | |||||||| ||||||||| | ||||||||||||||||||||||||| |||| ||| Sbjct 24191620 TAGGGTCTAAATCCAGCTCACATGCCCTATTAGTGGGTGAACAATCCAATGCTTGGTGAA 24191679 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||| |||| ||||||||||| || ||||| |||||||||||||||| || ||||| Sbjct 24191680 TTCTACTTCACAGTGATAGGAAGAACCAACATCACAGGATCAAAAAGCAACATCCCTATG 24191739 Query 182 AACGCTTGGCTGCCACAAGCCAGTTAT-CCCTGTGGTAACTT 222 || ||||||| || || |||||||||| ||| |||||||||| Sbjct 24191740 AATGCTTGGCCGCAACGAGCCAGTTATCCCCCGTGGTAACTT 24191781 >seq860 Length=57935654 Score = 188 bits (208), Expect = 1e-45 Identities = 144/170 (85%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||| Sbjct 23662662 TAAAACTAACCTGTCTCATGACGTTCTAAACCAAGCTCAGGTTCCCTGTTATTGGGTGAA 23662721 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 | ||||||||||| |||||||| ||| | ||||||||| || ||| | ||||||| Sbjct 23662722 CCATCCAACGCTTGGTGAATTCTGTTTC---ACAATAGGAAGATCCAACACCAAAGGATC 23662778 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||| | |||||||||||| |||||| | ||||| ||||||||||| Sbjct 23662779 AAAAAGCGATGTCGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCT 23662828 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG-CTTCG 131 ||||||||| ||| || ||||||||||||||||||| ||| |||||||| |||| Sbjct 42643803 CCCAGCTCAGGTTTTCTG--AGTGGGTGAACAATCCAAC-CTTGGTGAATTCTGTCTTCC 42643747 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||||||||| ||||| ||||||||||| Sbjct 42643746 A-ATGATAGGAAGAGCCCACATCCAAGGATCAAAA 42643713 >seq931 Length=156331669 Score = 109 bits (120), Expect = 9e-22 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||| Sbjct 71275557 AATTCTGCTTCACAATGATAGGAAGAGCCGACACTGAAGGATCAAAAAGCCACGTTGCTA 71275616 Query 180 TGAACGCTTGGCTGCCACAAGCC 202 ||||| ||||||||||| ||||| Sbjct 71275617 TGAACTCTTGGCTGCCATAAGCC 71275639 >seq235 Length=173266796 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||||||||| |||||||||||| || |||||||| ||||||| |||| Sbjct 15482295 TAGGAAGAGCCAACATCGAAGCATCAAAAAGCAAGGTTGCTATGAATGCTTGGCAGCCAT 15482354 Query 198 AAGCCAGT 205 |||||||| Sbjct 15482355 AAGCCAGT 15482362 >seq187 Length=203093366 Score = 87.8 bits (96), Expect = 3e-15 Identities = 150/220 (68%), Gaps = 17/220 (8%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| ||| | | |||| | ||||||| ||| || Sbjct 145847810 TCATCAGTAGGACAAAACTGTCCTGTATCACCATTGCCTAATCATAGCTCACATTCT-TA 145847752 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| |||||||||||||| || |||| ||| |||||||| |||| Sbjct 145847751 TTAATGGGTGAACAATCCCACCCTTAGTGAAGTCTGCTTCACAATGAAGAACCAATATTT 145847692 Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 | |||| || | ||| ||||| |||| || | | || ||||| ||| || | Sbjct 145847691 TACAACGAAGTGCTAATATCTAAGGACCAAACAGTGGCATTGCCATGAATACTTAGCCAC 145847632 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| || | ||| ||||| ||| ||||||| |||||| Sbjct 145847631 CACATTGCAATGATCTCTGTGATAAATTTTCTGACACCTC 145847592 >seq219 Length=165317712 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 19640692 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 19640747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854052165216