Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq931 237 1e-57 seq638 107 2e-18 seq377 98.7 8e-16 seq39 82.4 6e-11 >seq931 Length=156331669 Score = 237 bits (262), Expect = 1e-57 Identities = 596/893 (67%), Gaps = 21/893 (2%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| | || || || | |||||||||||||| | ||||| |||| ||||| || Sbjct 44830903 AACCCTTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAG 44830844 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 |||||||| |||||||||||||| |||||||| || ||||||| ||||| || Sbjct 44830843 AAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCAC 44830784 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||||| | | | || || | |||| || ||||| ||| |||||||| Sbjct 44830783 TGGGAACCCCTGAAGCCCGAGGAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCA 44830724 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGT 61283 || || || || || ||||| ||||| |||| || ||| || || || || | Sbjct 44830723 GCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGC-CAAATAGTTCAGAT 44830665 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 | || || || |||||||| |||||||| ||||||||||| || | || || || || Sbjct 44830664 TACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAAT 44830605 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAA 61403 ||| ||| | || || || || ||||||| || | ||| | ||| | ||||| Sbjct 44830604 GTATAGTCTCCTTATTGACACTTACATCAAAGATCTCAAAGAAAGGGAATTTCTCTTCAA 44830545 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC 61463 |||||| || ||||| || || ||| ||| || ||||||||||| ||||| Sbjct 44830544 TGCCATTGA-ACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGAT--T 44830488 Query 61464 CAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | |||| |||||| | |||||||| | | || || || | || || || | Sbjct 44830487 GGGGACAAAGAGGCTACCTATGGTGAACATGTTGTAGCCTTCGCTGCAGTAGAAGGCATC 44830428 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || || ||| || ||||| | || || ||| | |||||||| |||| ||||| || Sbjct 44830427 TTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGC 44830368 Query 61582 CTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGT 61640 || || || ||||| | || || || | || ||||| | || |||||||||||| Sbjct 44830367 CTCACGTTTTCCAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCTTG 44830309 Query 61641 TTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGT 61700 ||| | ||||||| | ||||| | || ||||||||| ||| | || || | Sbjct 44830308 CTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGTGAGAGAAATAAT 44830252 Query 61701 TCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCAT 61760 | | || || || ||||| ||||| || || || || ||||| || ||||| Sbjct 44830251 TATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCAT 44830192 Query 61761 CGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGT 61820 || |||||||| |||||| ||| || ||||| ||||| || ||| | || || | Sbjct 44830191 TGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCT 44830132 Query 61821 CGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || ||||| | ||| || | | | | | | ||||||||| || | ||| | Sbjct 44830131 GGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGACTTTACGGAGAAT 44830074 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || | ||||| || || || |||| | |||||||| ||||| Sbjct 44830073 ATTTCACT-----GAAAGACTAACTTCTTTGAGAGGAGAGTAGGCGAGTATCA 44830026 >seq638 Length=135235416 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 3886888 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 3886829 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 3886828 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCCGTCTG 3886769 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 3886768 AGACTCAATGATGGCATACCAAAG 3886745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || || || ||||||| || || || Sbjct 3890737 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCATAATAAATAGTTTCAAAG 3890678 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 3890677 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 3890618 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 3890617 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 3890574 >seq377 Length=146757320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 103158256 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATTGAGAAT 103158315 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 103158316 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 103158362 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 103169159 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATTGAGAAT 103169100 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 103169099 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 103169053 >seq39 Length=107640188 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 97372393 ATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 97372334 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || ||||| || |||||||||||||| | |||||||| Sbjct 97372333 ATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGT 97372279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397370740549040