Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq44 105 4e-21 seq170 98.7 6e-19 seq57 98.7 6e-19 seq53 98.7 6e-19 seq65 96.9 2e-18 seq54 96.9 2e-18 seq33 96.9 2e-18 seq91 93.3 2e-17 seq52 89.7 3e-16 seq11 86.0 3e-15 >seq44 Length=90338345 Score = 105 bits (116), Expect = 4e-21 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC-C 60 ||||||||||||||| ||||| | ||| |||| |||| |||| |||||| |||| | Sbjct 34161190 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCAC 34161131 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | | || ||||||||| ||||| ||| | ||||| ||||||||||||||||||||| Sbjct 34161130 GTTGCC-AGTCGGCATCGTTTATGGTCAGAACTACCACGGTATCTGATCGTCTTCGA 34161075 >seq170 Length=161802 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 110239 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 110180 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 110179 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 110123 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 154211 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 154152 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 154151 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 154095 >seq57 Length=179772 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 127092 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 127033 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 127032 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 126976 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 172173 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 172114 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 172113 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 172057 >seq53 Length=46709983 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 8210792 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 8210733 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 8210732 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 8210676 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 8255000 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 8254941 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 8254940 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 8254884 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 8393827 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 8393768 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 8393767 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 8393711 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 8438037 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 8437978 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 8437977 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 8437921 >seq65 Length=57227415 Score = 96.9 bits (106), Expect = 2e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| |||| |||| |||||| ||| Sbjct 10198397 AACCCAAAGACTTTGGTTTCTGGGAAGCTGCCCAGCGGGTCATGGAAATAACACCGCTGC 10198338 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||| ||||| ||||| ||| || |||||||||||||||||||||||| Sbjct 10198337 ATCACCAGTTGGCATCGTTTATGGTCGGAACAACGACGGTATCTGATCGTCTTCGA 10198282 >seq54 Length=50818468 Score = 96.9 bits (106), Expect = 2e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| |||| |||| ||||| ||| Sbjct 11251701 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCTGCCAC 11251760 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 11251761 ATCGCCAGTCGGCATCGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTCGA 11251816 Score = 84.2 bits (92), Expect = 1e-14 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCCC 60 |||||||||||| | ||||| | ||| |||| |||| | ||| ||||| |||| Sbjct 11630704 AACCCAAAGACT--GGTTTCTTGGAAGCTGCCCAGCGGGGTCATGGGAATAACGCCGCCA 11630647 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||| ||||||| Sbjct 11630646 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCATCTTCGA 11630590 >seq33 Length=107043718 Score = 96.9 bits (106), Expect = 2e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||| ||||| | ||| |||| |||| |||| ||||| ||| Sbjct 16055725 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCTGCCAC 16055666 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 16055665 ATCGCCAGTCGGCATCGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTCGA 16055610 >seq91 Length=392061 Score = 93.3 bits (102), Expect = 2e-17 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||| ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 219164 AACCCAAAGACTTTAGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCCGCCAC 219223 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||| ||||| ||||| ||| |||||||| |||||||||||||||||| Sbjct 219224 ATCGCCAGTTGGCATCGTTTATGGTCGGAACTACGACTGTATCTGATCGTCTTCGA 219279 >seq52 Length=64444167 Score = 89.7 bits (98), Expect = 3e-16 Identities = 93/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC-- 59 ||||||||||||||| ||||| | ||| |||| || | |||| | |||||| ||| Sbjct 29299005 AACCCAAAGACTTTGGTTTCTTGGAAGCTGCCCAGTGGGTCATGAAAATAACACTGCCGC 29299064 Query 60 -CG-ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||||||| |||| ||| ||||||| ||||||||||||||||||| Sbjct 29299065 ACGCATCGCCAGTCGGCATCTTTTATGGTCGGAACTACGATGGTATCTGATCGTCTTCGA 29299124 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/116 (76%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||| || | ||||| | ||| |||| |||| |||| ||||| |||| Sbjct 30486828 AACCCAAAGGCT--GGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACGCCGCCAC 30486885 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||| |||||||||||| |||||||| Sbjct 30486886 ATCGCCAGTCGGCATCGTTTATGGTCGGAACTACCACGGTATCTGATTGTCTTCGA 30486941 >seq11 Length=242193529 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||| | ||||| | ||| |||| |||| |||| |||||| |||| Sbjct 132255051 AACCCAAAGACT--GGTTTCTTGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCAC 132255108 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||| ||||| ||||| ||| | ||| ||||||||||||||||||||| Sbjct 132255109 ATCGCCAGTTGGCATCGTTTATGGTCGGAATTACAACGGTATCTGATCGTCTTCGA 132255164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278398491420