Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq52 89.7 6e-16 seq54 87.8 2e-15 seq33 87.8 2e-15 seq11 86.0 7e-15 seq170 82.4 9e-14 seq91 82.4 9e-14 seq57 82.4 9e-14 seq53 82.4 9e-14 seq44 82.4 9e-14 >seq52 Length=64444167 Score = 89.7 bits (98), Expect = 6e-16 Identities = 82/102 (80%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||||||||||||||| |||| |||| |||| ||||||||| ||| |||| | || Sbjct 30487088 GAAACCAACAAAATAGAACCGCA-GTCCCATTCCATTATTCCAAGCTGCAGTATCCAGGT 30487146 Query 69 G---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | |||||||||||||||||||||||| |||| ||||| Sbjct 30487147 GGCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 30487188 >seq54 Length=50818468 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || ||||||||| ||||||||| ||| |||| | |||| Sbjct 11251964 AAACCAACAAAATAGAACCGTG-GTCCTATTCCATTATTCCAAGCTGCAGTATCCAGGCG 11252022 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 11252023 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 11252063 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 11630442 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 11630384 Query 70 --TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | ||||||||||||||||||||||| |||| ||||| Sbjct 11630383 GCTCGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 11630343 >seq33 Length=107043718 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || ||||||||| ||||||||| ||| |||| | |||| Sbjct 16055462 AAACCAACAAAATAGAACCGTG-GTCCTATTCCATTATTCCAAGCTGCAGTATCCAGGCG 16055404 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||||| |||| ||||| Sbjct 16055403 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 16055363 >seq11 Length=242193529 Score = 86.0 bits (94), Expect = 7e-15 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || ||||||||| ||||||||| ||| |||| | |||| Sbjct 132255310 AAACCAACAAAATAGA-ACTGTGGTCCTATTCCATTATTCCAAGCTGCAGTATCCAGGCG 132255368 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 | |||||||||||||||||||||||| |||| |||| Sbjct 132255369 GCTTGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAA 132255408 >seq170 Length=161802 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 109975 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 109917 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 109916 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 109876 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 153947 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 153889 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 153888 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 153848 >seq91 Length=392061 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| | |||| | || | Sbjct 219427 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGAGGTATCCAGGTG 219485 Query 70 --TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | ||||||||||||||||||||||| |||| ||||| Sbjct 219486 GCTCGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 219526 >seq57 Length=179772 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 126828 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 126770 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 126769 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 126729 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 171909 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 171851 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 171850 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 171810 >seq53 Length=46709983 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8210528 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8210470 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8210469 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8210429 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8254736 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8254678 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8254677 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8254637 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8393563 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8393505 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8393504 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8393464 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8437773 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8437715 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8437714 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8437674 >seq44 Length=90338345 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 34160927 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 34160869 Query 70 ---TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 34160868 GCTTGGACCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 34160828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595196667252