Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq170 104 4e-20 seq57 104 4e-20 seq53 104 4e-20 seq46 75.2 2e-11 seq31 75.2 2e-11 >seq170 Length=161802 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 117947 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 118004 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 118005 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 118058 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||| |||||||| |||||||||||||| ||||||||| |||||| Sbjct 95765 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCCCGCCCAGAA 95822 >seq57 Length=179772 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 134810 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 134867 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 134868 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 134921 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||| |||||||| |||||||||||||| ||||||||| |||||| Sbjct 112493 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCCCGCCCAGAA 112550 >seq53 Length=46709983 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 8218472 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 8218529 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 8218530 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8218583 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 8401510 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 8401567 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 8401568 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8401621 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 8445742 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 8445799 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 8445800 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8445853 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||| |||||||| |||||||||||||| ||||||||| |||||| Sbjct 8196256 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCCCGCCCAGAA 8196313 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||||||||||| |||||||| |||||||||||||| ||||||||| |||||| Sbjct 8379301 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCCCGCCCAGAA 8379358 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| | ||||| | || || |||| || || | Sbjct 14085092 GTAGGAGAGGAACCCCAGG-TTCAGAC-ATTTGGTGTATGTCCTTGGCTGAGGAGCCAAT 14085035 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||| || |||||||| ||||||| |||||||||||||||| Sbjct 14085034 GGGGTAAAGCTACCATATGTGGGATTATGACTGAACGACTCTAAGTCAGAATCC 14084981 >seq46 Length=83257441 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||| ||||||||||||| Sbjct 77162292 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTTTAAGTCAGAATCC 77162242 >seq31 Length=133275309 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TA 103 || |||| || || || |||||||||||||||| |||||||| ||||||||||| || Sbjct 127166441 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTTA 127166382 Query 104 AGTCAGAATCC 114 ||||||||||| Sbjct 127166381 AGTCAGAATCC 127166371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819195412992