Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homo_20sapiens_20[refseq_20GCF_5F000001405.37_202017-06-14] 578 sequences; 3,253,848,404 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq64 235 4e-57 seq29 107 2e-18 seq22 98.7 8e-16 >seq64 Length=156040895 Score = 235 bits (260), Expect = 4e-57 Identities = 598/895 (67%), Gaps = 25/895 (3%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||| | || || || | |||||||||||||| | ||||| |||| ||||| | Sbjct 44310252 AACCCTTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATGAG 44310193 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 |||||||| |||||||||||||| |||||||| || ||||||| ||||| || Sbjct 44310192 AAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCAC 44310133 Query 61165 TGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| | | | | | || || | |||| || ||||| ||| ||||||| Sbjct 44310132 TGGGAATCCCTGAAGCCCGAGGAGAG--ATATTTTATATCCCATGTTCTGGTTTTCTTTG 44310075 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAA 61281 | || || || || | ||||| ||||| |||| || ||| || | || | || Sbjct 44310074 CAGCAAGTGATGGCATAATAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTT-CAG 44310016 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || || |||||||| |||||||| ||||||||||| || | || || || Sbjct 44310015 ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 44309956 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 ||||| ||| | || || || || ||||||| || | ||| | ||| | ||| Sbjct 44309955 ATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAGGGAATTTCTCTTC 44309896 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 |||||||| || ||||| || || ||| ||| || ||||||||||| ||||| Sbjct 44309895 AATGCCATTGA-ACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGAT- 44309838 Query 61462 ACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | |||| |||||| | ||||||||| | | || ||||| | || || || Sbjct 44309837 -TGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCA 44309779 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || || ||| || ||||| | || || ||| | |||||||| |||| ||||| | Sbjct 44309778 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTG 44309719 Query 61580 GTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || || || ||||| | || || || | || ||||| | || |||||||||||| Sbjct 44309718 GCCTCACGTTTTCCAATGAACTTATTAGCA-GAGAAGAGGGTTTACACTGTGATTTTGCT 44309660 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 ||| | ||||||| | ||||| | || ||||||||| ||| | || || Sbjct 44309659 TGCTTGATGTTCAAAC---ACCTGGTACACAAACCATCGGAGGAGAAAGTGAGAGAAATA 44309603 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || | || || || ||||| ||||| || || || || ||||| || ||| Sbjct 44309602 ATTATCAATGCTGTTCAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTC 44309543 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || || |||||||| |||||| ||| || ||||| ||||| || ||| | || || Sbjct 44309542 ATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATG 44309483 Query 61819 GTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | || ||||| | ||| || | | | | | | ||||||||| || | ||| | Sbjct 44309482 CTGGAACTGGGT-TTTAGCAAGGTTTTCGGAGTAG-AGAGCCCATTTGACTTTACGGAGA 44309425 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || | ||||| || || || |||| | |||||||| ||||| Sbjct 44309424 ATATTTCACT-----GAAAGACTAACTTCTTTGAGAGGAGAGTAGGCGAGTATCA 44309375 >seq29 Length=135086622 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 4123372 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 4123313 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| ||||| || || || Sbjct 4123312 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCCGTCTG 4123253 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 4123252 AGACTCAATGATGGCATACCAAAG 4123229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || || || ||||||| || || || Sbjct 4127216 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCACCATAATAAATAGTTTCAAAG 4127157 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 4127156 ATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 4127097 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 4127096 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 4127053 >seq22 Length=145138636 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 102225003 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 102224944 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 102224943 GTTCACTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 102224897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565199381920