Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3767 154 6e-35 seq463 149 3e-33 seq228 118 4e-24 seq1 111 7e-22 seq434 100 1e-18 seq186 84.2 9e-14 seq163 84.2 9e-14 >seq3767 Length=2501 Score = 154 bits (170), Expect = 6e-35 Identities = 106/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1374 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGGGCGAAGCCAGAGGAAACTCTG 1315 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1314 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1255 Score = 109 bits (120), Expect = 2e-21 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | | |||| |||||| | | ||||| ||||||| Sbjct 2162 GAGTCGGTTTGCTTGGGAATGCAGCCCATAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 2103 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | || || ||||||| |||||| | Sbjct 2102 ACCGGCACGAGACTGATAGTCAACAAGTACCGTAAGGGACAGTTGAAAAGAACTTTGAAG 2043 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 2042 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 2003 >seq463 Length=78541002 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 31044142 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 31044201 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 31044202 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 31044261 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 31042985 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 31043044 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 31043045 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 31043104 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 31043105 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 31043144 >seq228 Length=146850525 Score = 118 bits (130), Expect = 4e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||||||||||| |||| |||||||||||| | |||| Sbjct 56891592 TGTTAGGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACAGTCTG 56891533 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || || ||| | |||||||| |||||| | |||||||||||| || Sbjct 56891532 GTGGAGGTCCATTGCAGTCCTGTCCTGCAAATCCATCGTCCGACCTGGGTATAGGGGTGA 56891473 Score = 75.2 bits (82), Expect = 5e-11 Identities = 92/125 (74%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||| | ||||||||||||||||||| | | |||||||||| Sbjct 69531997 GAGCACACGTGTTAGGAATAAAGAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAG 69531938 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| |||||||||| | || ||| ||| | |||||| ||| | | || ||| || Sbjct 69531937 GAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGCCCAACCTGGATA 69531880 Query 675 TAGGG 679 ||||| Sbjct 69531879 TAGGG 69531875 >seq1 Length=227556264 Score = 111 bits (122), Expect = 7e-22 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||| ||||| |||||||||||||||| ||| ||| Sbjct 106714367 GAGCATGAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGTCAAAG 106714426 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || ||| || ||| ||||||||| || || || Sbjct 106714427 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCAGTCATCCAACC 106714486 Query 669 TGGGTATAGGG 679 ||||| ||||| Sbjct 106714487 TGGGTGTAGGG 106714497 >seq434 Length=59248254 Score = 100 bits (110), Expect = 1e-18 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| |||||||||||||||||| Sbjct 24078525 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTC 24078466 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| | ||||| ||| ||||| || ||||||||||||| Sbjct 24078465 GTGGGGGTCTGTAGTGGTCCTGACATGCAAGTCGGTCGTCTGATCTGGGTATAGGGGC 24078408 Score = 95.1 bits (104), Expect = 5e-17 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| ||||| | | | |||| || || | ||||| ||||||||||||| || ||| Sbjct 23576229 GAGCAAGAGAACATGTTGTTAGGCACCAAGAGATGATGAACTATGCCTGGGCAGCAGGAA 23576288 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| | |||||||| | |||||| ||| |||| |||||| ||||| || Sbjct 23576289 GCCAGAGGAAACGCCGGTGGAGGTCTGTAGCGGTCCTGACGTGTAAATCGGTCGTCTGAT 23576348 Query 668 TTGGGTATAGGG 679 ||||||| ||| Sbjct 23576349 CTGGGTATGGGG 23576360 Score = 84.2 bits (92), Expect = 9e-14 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || |||||| ||||||||||||| |||| ||||||||| |||| ||| Sbjct 24239819 TGTTAGGCACCAAAAGATAATGAACTATGCCTGGGCAGGGCCAAGCCAGAGAAAACCCTG 24239760 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | || | ||| || ||| |||||||||| ||||| || || |||||||||| Sbjct 24239759 TGGGCGTCT-GTAGCAGTCCTGACGTGCAAATCAGTCGTCTGATCTGTGTATAGGGGC 24239703 Score = 78.8 bits (86), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||||||| ||||||||||| | |||| ||| |||||| | ||||| | |||| Sbjct 23575296 GAGTCGAGTTGCTTGGGAATGCAAC-CTAAGGAGGGTGGTAAACTCTATCTAAGGTTAAA 23575354 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||| | | |||||| || | ||||| ||||||| |||||| | Sbjct 23575355 TACTGGCACGAGACC-ACAATTGTCAAGTACTGTAAGAGAAAGCTGAAAAGAACTTTGAA 23575413 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 | |||| || || |||||||| Sbjct 23575414 GACGCAGTTCAAGAGGACGTGAAA 23575437 >seq186 Length=181584905 Score = 84.2 bits (92), Expect = 9e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| |||||||||||| | || || | |||||| | | |||| ||||||| Sbjct 122585220 GAGTTGGGTTGCTTGGGAATGCAGACCAAAGTGAGTGGTAAACTCCATCTATGGCTAAAT 122585279 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||| ||| | | ||||| ||||||| |||||| | Sbjct 122585280 ACTGGCGTGAGACCAATAGTCAACACGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 122585339 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 122585340 AGAGACTTCAAGAG 122585353 >seq163 Length=189454096 Score = 84.2 bits (92), Expect = 9e-14 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||| || || | || || |||||||||||||||||||||| || | | | Sbjct 106399667 GAGTATGAGCACAG-TGCTAGGGCCTAAAAGATGGTGAACTATGCCTGAGCAGAGGAATG 106399609 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||| |||||||| ||||||||| | | || ||||||| ||||| || | || || Sbjct 106399608 CCACAGGAAACT-TGGTGGAGGTTTGTAGTGGTTCTGATGTGCAGATTGGTCATC 106399555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079836958550