Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq509 244 2e-62 seq463 244 2e-62 seq228 170 3e-40 seq186 149 1e-33 seq336 145 1e-32 seq202 129 9e-28 >seq509 Length=319999 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 366 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 424 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 425 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 483 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 484 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 543 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 544 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 603 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 604 ATCAATCTGTC 614 >seq463 Length=78541002 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 31039916 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 31039858 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 31039857 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 31039799 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 31039798 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 31039739 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 31039738 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 31039679 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 31039678 ATCAATCTGTC 31039668 >seq228 Length=146850525 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 105442346 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 105442405 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 105442406 ACTAAGAACGGCCATGCACCACCACCCACGGAATCAAGAAAGAGCTATCAATCTGTC 105442462 >seq186 Length=181584905 Score = 149 bits (164), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||| | |||||||||| ||||||||| |||| || ||| ||| ||| | |||| Sbjct 174816997 CTATGAGCATCACAGATCTGTTATTGT-TCAATCTCGGGTTG-CTGAGCACCACTTGTCC 174817054 Query 106 CTCTAAGAAGCCAGCCA---CCAAC----CATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||| | || || || | |||| ||| | |||| | | | Sbjct 174817055 CTCTAAGAAGTTGGGGGAGGCCGACTGCTCAGGGATCATGGAACTAGTCAGCATGCCAGG 174817114 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||| |||||||||||| |||||||||||||||| |||||||| Sbjct 174817115 GTCTCATTCCTTATCAGAATTTACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGC 174817174 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||| |||||||||| ||| |||||| Sbjct 174817175 ACCACCACCCATAGAATCGAGAAAGAGCTGTCATTCTGTC 174817214 >seq336 Length=130733371 Score = 145 bits (160), Expect = 1e-32 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || |||||||| |||||| ||||||||||||||||| |||||||| Sbjct 21781025 CTAGTTAGCATTTCAAAGTCTCGTTTGTTATCAAAATTAACCAGACAAATCGCTCCACCA 21780966 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||| |||||||||||||||||| ||||| ||||||||||||||||| Sbjct 21780965 ACTAAGAACAGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC 21780913 >seq202 Length=171882078 Score = 129 bits (142), Expect = 9e-28 Identities = 159/212 (75%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 154828914 GTCAGTGTAGCACATGTGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 154828972 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 || | || |||||| | |||| | ||||||||||||| | | || | Sbjct 154828973 GAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGTTGACTGCT 154829031 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 154829032 TGGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 154829091 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| |||||||| Sbjct 154829092 AAATTACTCCACCAACTAAGAACTGCCATGCA 154829123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796741327881