Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq228 347 2e-93 seq434 187 4e-45 seq93 89.7 9e-16 seq30 82.4 1e-13 seq186 80.6 5e-13 seq375 78.8 2e-12 seq163 78.8 2e-12 >seq228 Length=146850525 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 45349469 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 45349410 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 45349409 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 45349350 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 45349349 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 45349290 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 45349289 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 45349230 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 45349229 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 45349176 >seq434 Length=59248254 Score = 187 bits (206), Expect = 4e-45 Identities = 155/189 (82%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||||||||||||||||||| | ||||||| |||||| ||||| | ||| ||||||| Sbjct 24076178 GTAAAACTAACCTGTCTCATGATGTTCTAAACTAAGCTCAGGTTCCTTGTTACTGGGTGA 24076237 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | ||||||||| || || | |||||| Sbjct 24076238 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGATCCAGCACCAAAGGAT 24076294 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||| || ||||||||| |||||| | ||||| |||||||||||||||| || Sbjct 24076295 CAAAAAGCAATGTTGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCTGTGGTGTCT 24076354 Query 222 TTTCTGGCA 230 | |||| || Sbjct 24076355 TCTCTGACA 24076363 Score = 170 bits (188), Expect = 3e-40 Identities = 128/150 (85%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||| |||||||||||| | ||||||||||||||| ||||||||||| ||| ||| Sbjct 23578546 GTAAAACTATCCTGTCTCATGATGTTCTAAACCCAGCTCAGGTTCCCTATTATTGGATGA 23578487 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | |||||||||||| |||| || |||| Sbjct 23578486 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGAGCCAACATTGAGGGAT 23578430 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGC 191 ||||||| |||||||||||||| |||||| Sbjct 23578429 CAAAAAGGGACGTCGCTATGAACTCTTGGC 23578400 >seq93 Length=170955103 Score = 89.7 bits (98), Expect = 9e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||| |||| |||||||||||| || |||||||||||||||| ||||| Sbjct 155757635 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCGCCAC 155757576 Query 198 AAGCCAG 204 ||||||| Sbjct 155757575 AAGCCAG 155757569 >seq30 Length=192460366 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 73913640 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 73913699 Query 60 ATGACGGTCTAAACCCAGCTCA 81 | || ||||||||||||| ||| Sbjct 73913700 AGGATGGTCTAAACCCAGATCA 73913721 >seq186 Length=181584905 Score = 80.6 bits (88), Expect = 5e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||| |||| | || |||||||| ||||| | ||||||||||||||| ||||| || || Sbjct 154767009 TCACAAAGTGATGTTGCTATGAATGCTTGACCACCACAAGCCAGTTATTCCTGTAGTCAC 154766950 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| || ||| || | ||| | || | ||||||| || || ||||| Sbjct 154766949 TTTTCTGACATCTCCTGCTTGAAACCCAAAAGGTCAGAAGGATCATGAGTCCCTGCTTTC 154766890 Query 281 ATGGTTTGTATTCA 294 | ||| |||||||| Sbjct 154766889 AAGGTCTGTATTCA 154766876 >seq375 Length=80997621 Score = 78.8 bits (86), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || |||||||||||||||||||||||| |||||||| Sbjct 60920940 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGCCAGTTATCTCTGTGGTA 60920885 >seq163 Length=189454096 Score = 78.8 bits (86), Expect = 2e-12 Identities = 154/228 (68%), Gaps = 21/228 (9%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| | | | | |||| | ||||||||||| | || Sbjct 132895086 TCATCAGTAGGACAAAACTGCCCTGTATTACCATTGCCTAATCACAGCTCACGTT-CTTA 132895028 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| |||||||||||| | || |||| ||| ||||||| |||| Sbjct 132895027 TTAATGGGTGAACAATGCCACCCTTAGTGAAGGCTGCTTCATAATGAAGAACCAATATTT 132894968 Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAA-AAGCA---ACGTCGCTATGAACGCTTGG 190 | |||| || | ||| ||||| |||| || || | | || ||||| ||||| Sbjct 132894967 TACAATGAAGTGCTAATATCTAAGGACCAAACAAACAGTGGCATTGCCATGAATACTTGG 132894908 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | ||||| |||| ||| ||||| || |||||| ||||||| || Sbjct 132894907 CCACCACATTGCAGTGATCTCTGTGACAAACTTTCTGACACCTCTTGC 132894860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854335057056