Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq509 387 4e-105 seq463 387 4e-105 seq398 118 3e-24 seq30 82.4 2e-13 >seq509 Length=319999 Score = 387 bits (428), Expect = 4e-105 Identities = 421/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1338 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1397 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1457 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 1458 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 1517 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 1518 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 1577 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 1578 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 1637 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 1638 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 1696 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 1697 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 1754 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 1755 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 1814 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 1815 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 1874 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 1875 CATATG-CTACTGGCAG 1890 >seq463 Length=78541002 Score = 387 bits (428), Expect = 4e-105 Identities = 421/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 31038944 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 31038885 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31038884 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 31038825 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 31038824 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 31038765 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 31038764 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 31038705 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 31038704 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 31038645 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 31038644 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 31038586 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 31038585 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 31038528 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 31038527 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 31038468 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 31038467 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 31038408 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 31038407 CATATG-CTACTGGCAG 31038392 >seq398 Length=96864807 Score = 118 bits (130), Expect = 3e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 69039489 TAATTTGCACGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 69039430 Query 139 GAATCGAACCCTAAT 153 |||| ||||||| || Sbjct 69039429 GAATGGAACCCTGAT 69039415 >seq30 Length=192460366 Score = 82.4 bits (90), Expect = 2e-13 Identities = 114/153 (75%), Gaps = 9/153 (6%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||| | |||||||||| |||||| | |||| | | | || || | | | ||| Sbjct 33655703 AGCATGTGTCAGCTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 33655762 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATAC 455 | | | | | ||||||||||||||||| | ||||||| ||| ||| || || || Sbjct 33655763 AGGATCCACACATGATTTAATGAGCCATTTACCGTTTCACCGTACTAGCCATG--TACAC 33655820 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||| |||||||||||||||||||| ||||||| Sbjct 33655821 TTACACATGCATGGCTTAATCTTTCTGACAAGC 33655853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510285194496