Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12]
7,601 sequences; 2,946,843,737 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq509 387 4e-105
seq463 387 4e-105
seq398 118 3e-24
seq30 82.4 2e-13
>seq509
Length=319999
Score = 387 bits (428), Expect = 4e-105
Identities = 421/557 (76%), Gaps = 59/557 (11%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 1338 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1397
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1457
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 1458 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 1517
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 1518 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 1577
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286
|| | |||||| | | ||||| || ||||||| || ||||
Sbjct 1578 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 1637
Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319
|| |||| ||||| |||| |||| |||||| ||
Sbjct 1638 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 1696
Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372
|||| ||||| ||||| | |||||||||||||||||||||||||| ||
Sbjct 1697 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 1754
Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427
|||||| |||| | || | | | |||| ||| |||||||||||||||||||||||
Sbjct 1755 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 1814
Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1815 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 1874
Query 488 CATATGACTACTGGCAG 504
|||||| ||||||||||
Sbjct 1875 CATATG-CTACTGGCAG 1890
>seq463
Length=78541002
Score = 387 bits (428), Expect = 4e-105
Identities = 421/557 (76%), Gaps = 59/557 (11%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 31038944 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 31038885
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31038884 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 31038825
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 31038824 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 31038765
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 31038764 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 31038705
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286
|| | |||||| | | ||||| || ||||||| || ||||
Sbjct 31038704 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 31038645
Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319
|| |||| ||||| |||| |||| |||||| ||
Sbjct 31038644 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 31038586
Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372
|||| ||||| ||||| | |||||||||||||||||||||||||| ||
Sbjct 31038585 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 31038528
Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427
|||||| |||| | || | | | |||| ||| |||||||||||||||||||||||
Sbjct 31038527 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 31038468
Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487
|||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 31038467 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 31038408
Query 488 CATATGACTACTGGCAG 504
|||||| ||||||||||
Sbjct 31038407 CATATG-CTACTGGCAG 31038392
>seq398
Length=96864807
Score = 118 bits (130), Expect = 3e-24
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 69039489 TAATTTGCACGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 69039430
Query 139 GAATCGAACCCTAAT 153
|||| ||||||| ||
Sbjct 69039429 GAATGGAACCCTGAT 69039415
>seq30
Length=192460366
Score = 82.4 bits (90), Expect = 2e-13
Identities = 114/153 (75%), Gaps = 9/153 (6%)
Strand=Plus/Plus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397
||||||| | |||||||||| |||||| | |||| | | | || || | | | |||
Sbjct 33655703 AGCATGTGTCAGCTCTAGAACTACCACAGACATCCCAGAAAGAGAAAAGTGAGTGACCAA 33655762
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATAC 455
| | | | | ||||||||||||||||| | ||||||| ||| ||| || || ||
Sbjct 33655763 AGGATCCACACATGATTTAATGAGCCATTTACCGTTTCACCGTACTAGCCATG--TACAC 33655820
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
||| |||||||||||||||||||| |||||||
Sbjct 33655821 TTACACATGCATGGCTTAATCTTTCTGACAAGC 33655853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510285194496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |