Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20fascicularis_20[refseq_20GCF_5F000364345.1_202013-06-12] 7,601 sequences; 2,946,843,737 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq481 217 1e-51 seq336 107 2e-18 seq228 95.1 1e-14 seq323 91.5 1e-13 >seq481 Length=152835861 Score = 217 bits (240), Expect = 1e-51 Identities = 607/915 (66%), Gaps = 30/915 (3%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || | ||||| || | |||||||||||||| | | Sbjct 42597667 ATGAGCCGCTGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATG 42597608 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || ||||||||||||||||||||||| | |||||||| || Sbjct 42597607 ATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACC 42597548 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG-GTGAACA-ACATTTCATTAA 61202 |||||| ||||| ||||||| || | ||| | | | | | |||| || Sbjct 42597547 CGTCCAAGGACATTTGGCACTGGGAA--TTCCTGAAGCCCGAGGAGAGATATTTTATATC 42597490 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| ||| |||||||| || || || || || |||| || || |||| || Sbjct 42597489 CCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCG 42597431 Query 61263 TT-TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 | | || || || || || ||| | || || || ||||||| |||||||| ||||||| Sbjct 42597430 ATGTAGC-CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCA 42597372 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || | ||||| ||| | || || || || ||||| | || | Sbjct 42597371 TGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCA 42597312 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| ||||||||||| || ||||| || || ||| ||| || | Sbjct 42597311 AAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 42597252 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGC 61499 |||||||||| | ||||| | |||| | ||||| | ||| ||||| | | | Sbjct 42597251 ATTGGGCCTTGCACTGGAT--TGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGT 42597194 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | | || || | |||| ||| | ||||| | || || ||| | || Sbjct 42597193 CTTTGCTGCAGCGGAAGGCATCTTTT---CTGGTTATTTTGCATCGATATTCTGGCTCAA 42597137 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 |||||| ||||| ||||| || || ||||| |||||| | || | || ||||| Sbjct 42597136 GAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGG 42597077 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || |||||||||||| || | ||||| | | ||||| | || | ||| Sbjct 42597076 TTTACACTGTGATTTTGCTTGCCTGATGTTCAATC---ACCTGGTACACAAACCATTGGA 42597020 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 |||| | || | || | || | || || || ||||||||||| || ||||| Sbjct 42597019 GGAGAGAGTAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGA 42596960 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || ||||| || ||||| || |||||||| |||||| ||| || ||||| || Sbjct 42596959 GGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTT 42596900 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAA 61856 ||| || ||| | | || || ||||| | ||| || | | | | || | || Sbjct 42596899 TGTGGCAGACAGAC--ATGCCGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAA 42596845 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||||||||| || ||||| | ||||| || | |||||||| || || ||||| | Sbjct 42596844 CCCATTTGACTTTATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAG 42596790 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| Sbjct 42596789 AGTAAAGGAGTATCA 42596775 >seq336 Length=130733371 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 66514914 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 66514973 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| || || ||||| || || ||| Sbjct 66514974 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCTGTTTG 66515033 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 66515034 AGACTCAATGATGGCATACCAAAG 66515057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || |||| || || || || Sbjct 66510287 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATATATAGTTTCAAAG 66510346 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 66510347 ATCTGCTTATTTAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 66510406 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 66510407 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 66510450 >seq228 Length=146850525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 103374262 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 103374203 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 103374202 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 103374156 >seq323 Length=111193037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 100859734 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 100859675 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 100859674 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACTGCCGAGGAGGT 100859620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531170418640