Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq261797 149 3e-33 seq210621 149 3e-33 seq133696 149 3e-33 seq60637 149 3e-33 seq182031 136 2e-29 seq8 122 4e-25 seq1 111 7e-22 seq19 95.1 5e-17 seq20 87.8 7e-15 seq5 84.2 9e-14 >seq261797 Length=48357 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 16098 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 16039 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 16038 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 15979 Score = 118 bits (130), Expect = 4e-24 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 17254 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 17195 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 17194 ACCGGAC-GAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 17136 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 17135 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 17096 >seq210621 Length=488 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 114 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 173 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 174 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 233 >seq133696 Length=503 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 392 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 333 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 332 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 273 >seq60637 Length=340 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 227 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 168 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 167 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 108 >seq182031 Length=4412 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 1504 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1563 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1564 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 1622 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1623 GAGAGAGTTCAATAGTACGTGAAA 1646 Score = 132 bits (146), Expect = 2e-28 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| || | |||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 2279 AAGAGCGTACACGCTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAG 2338 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||| Sbjct 2339 GGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGG 2398 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 2399 TATAGGGGCGA 2409 >seq8 Length=144306982 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||| ||||||||||||| |||| |||||||||||| |||||| Sbjct 53796646 TGTTAGGACCCCAAAGATGGCGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 53796587 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | ||||| ||| | |||||||| |||||| | |||||||||||| || Sbjct 53796586 GTGGAGGTCCATTGCGGTCCTGTCCTGCAAATCCATCGTCCGACCTGGGTATAGGGGTGA 53796527 Score = 75.2 bits (82), Expect = 5e-11 Identities = 92/125 (74%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||| | ||||||||||||||||||| | | |||||||||| Sbjct 66457354 GAGCACACGTGTTAGGAATAAAGAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAG 66457295 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| |||||||||| | || ||| ||| | |||||| ||| | | || ||| || Sbjct 66457294 GAAA--CTGGTGGAGGTCCACAATGGTCCTGATGGGCAAATTGATTGCCCAACCTGGATA 66457237 Query 675 TAGGG 679 ||||| Sbjct 66457236 TAGGG 66457232 >seq1 Length=225584828 Score = 111 bits (122), Expect = 7e-22 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||| ||||| |||||||||||||||| ||| ||| Sbjct 121202978 GAGCATGAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGTCAAAG 121202919 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || ||| || ||| ||||||||| || || || Sbjct 121202918 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGATGTGCAAATCAGTCATCCAACC 121202859 Query 669 TGGGTATAGGG 679 ||||| ||||| Sbjct 121202858 TGGGTGTAGGG 121202848 >seq19 Length=53671032 Score = 95.1 bits (104), Expect = 5e-17 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| ||||| | | | |||| || || | ||||| ||||||||||||| || ||| Sbjct 22440906 GAGCAAGAGAACATGTTGTTAGGCACCAAGAGATGATGAACTATGCCTGGGCAGCAGGAA 22440847 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| |||| ||||| | |||||| ||| |||| |||||| ||||| || Sbjct 22440846 GCCAGAGGAAACGCTGGCGGAGGTCTGTAGCGGTCCTGACGTGTAAATCGGTCGTCTGAT 22440787 Query 668 TTGGGTATAGGG 679 ||||||| ||| Sbjct 22440786 CTGGGTATGGGG 22440775 Score = 78.8 bits (86), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||||||| ||||||||||| | |||| ||| |||||| | ||||| | |||| Sbjct 22441831 GAGTCGAGTTGCTTGGGAATGCAAC-CTAAGGAGGGTGGTAAACTCTATCTAAGGTTAAA 22441773 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||| | | |||||| || | ||||| ||||||| |||||| | Sbjct 22441772 TACTGGCACGAGACC-ACAATTGTCAAGTACTGTAAGAGAAAGCTGAAAAGAACTTTGAA 22441714 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 | |||| || || |||||||| Sbjct 22441713 GACGCAGTTCAAGAGGACGTGAAA 22441690 >seq20 Length=74971481 Score = 87.8 bits (96), Expect = 7e-15 Identities = 94/120 (78%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 570 GACCCGAAAG-ATGGTGAACTATGCCTGAATA--GGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||| |||| ||||||||||||||||| || ||| |||||||| ||||||||||||| Sbjct 30212731 GACCCAAAAGGATGGTGAACTATGCCTGCGTACGGGGCGAAGCCAGTGGAAACTCTGGTG 30212790 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGC-AAATCGATCGTC--AAATTTGGGTATAGGGGCGA 683 |||| || ||| || ||| | ||| |||||| ||| | | ||||||||||| || Sbjct 30212791 GAGGTCCGTAGCAGTCCTGACATGCAAAATCGGGTGTCCGACCTGCGGGTATAGGGGTGA 30212850 >seq5 Length=190429646 Score = 84.2 bits (92), Expect = 9e-14 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||| || || | || || |||||||||||||||||||||| || | | | Sbjct 103417161 GAGTATGAGCACAG-TGCTAGGGCCTAAAAGATGGTGAACTATGCCTGAGCAGAGGAATG 103417219 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||| |||||||| ||||||||| | | || ||||||| ||||| || | || || Sbjct 103417220 CCACAGGAAACT-TGGTGGAGGTTTGTAGTGGTTCTGATGTGCAGATTGGTCATC 103417273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073892584400