Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 217 1e-51 seq166179 107 2e-18 seq14 107 2e-18 seq8 95.1 1e-14 seq13 91.5 1e-13 >seq21 Length=149150640 Score = 217 bits (240), Expect = 1e-51 Identities = 607/915 (66%), Gaps = 30/915 (3%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || | ||||| || | |||||||||||||| | | Sbjct 44401473 ATGAGCCGCTGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATG 44401414 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || ||||||||||||||||||||||| | |||||||| || Sbjct 44401413 ATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACC 44401354 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG-GTGAACA-ACATTTCATTAA 61202 |||||| ||||| ||||||| || | ||| | | | | | |||| || Sbjct 44401353 CGTCCAAGGACATTTGGCACTGGGAA--TTCCTGAAGCCCGAGGAGAGATATTTTATATC 44401296 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| ||| |||||||| || || || || || |||| || || |||| || Sbjct 44401295 CCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCG 44401237 Query 61263 TT-TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 | | || || || || || ||| | || || || ||||||| |||||||| ||||||| Sbjct 44401236 ATGTAGC-CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCA 44401178 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || | ||||| ||| | || || || || ||||| | || | Sbjct 44401177 TGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCA 44401118 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| ||||||||||| || ||||| || || ||| ||| || | Sbjct 44401117 AAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 44401058 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGC 61499 |||||||||| | ||||| | |||| | ||||| | ||| ||||| | | | Sbjct 44401057 ATTGGGCCTTGCACTGGAT--TGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGT 44401000 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | | || || | |||| ||| | ||||| | || || ||| | || Sbjct 44400999 CTTTGCTGCAGCGGAAGGCATCTTTT---CTGGTTATTTTGCATCGATATTCTGGCTCAA 44400943 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 |||||| ||||| ||||| || || ||||| |||||| | || | || ||||| Sbjct 44400942 GAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGG 44400883 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || |||||||||||| || | ||||| | | ||||| | || | ||| Sbjct 44400882 TTTACACTGTGATTTTGCTTGCCTGATGTTCAATC---ACCTGGTACACAAACCATTGGA 44400826 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 |||| | || | || | || | || || || ||||||||||| || ||||| Sbjct 44400825 GGAGAGAGTAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGA 44400766 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || ||||| || ||||| || |||||||| |||||| ||| || ||||| || Sbjct 44400765 GGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTT 44400706 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAA 61856 ||| || ||| | | || || ||||| | ||| || | | | | || | || Sbjct 44400705 TGTGGCAGACAGAC--ATGCCGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAA 44400651 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||||||||| || ||||| | ||||| || | |||||||| || || ||||| | Sbjct 44400650 CCCATTTGACTTTATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAG 44400596 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| Sbjct 44400595 AGTAAAGGAGTATCA 44400581 >seq166179 Length=1001 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 587 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 646 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| || || ||||| || || ||| Sbjct 647 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCTGTTTG 706 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 707 AGACTCAATGATGGCATACCAAAG 730 >seq14 Length=127894412 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 63313812 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 63313871 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| || || ||||| || || ||| Sbjct 63313872 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCTGTTTG 63313931 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 63313932 AGACTCAATGATGGCATACCAAAG 63313955 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 63309182 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAG 63309241 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 63309242 ATCTGCTTATTTAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 63309301 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 63309302 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 63309345 >seq8 Length=144306982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 100939961 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 100939902 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 100939901 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 100939855 >seq13 Length=108979918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 10121412 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 10121471 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 10121472 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACTGCCGAGGAGGT 10121526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396188390337920