Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20mulatta_20[refseq_20GCF_5F000772875.2_202015-11-30] 284,728 sequences; 3,236,224,332 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq159476 109 2e-18 >seq159476 Length=1790 Score = 109 bits (120), Expect = 2e-18 Identities = 393/602 (65%), Gaps = 41/602 (7%) Strand=Plus/Minus Query 88662 CCCTGCCTGTTCGAGTACGTCTACTTTGCCCACCCAAACTCGGTGCTCGACGGTATACCG 88721 |||||| ||||||||| |||||| | || | ||| |||||||| | ||||| || | Sbjct 731 CCCTGCATGTTCGAGTTCGTCTATCTGGCGCGCCCGGACTCGGTGATGGACGGCATCTCC 672 Query 88722 GTCTACGGGGCGCGTCTGGAGATGGGCAGGTTGTTGGCT--GCCCG-CATCAGGCATGTG 88778 |||||| ||| || ||| | |||||| | | |||| || || |||| | || Sbjct 671 GTCTACCAGGCCCGCCTGAACATGGGCGAGACGCTGGCCCAGCGCGTCATCTCGACGATG 612 Query 88779 CTGAGTGCCGAGCAACTGGCCGAGGTGCAGTGCGTGATCGCCGTGCCGGAGACGGCGCGG 88838 | | |||||| | | ||| || ||| ||| || | ||||||| | || | Sbjct 611 CCG----CCGAGCGA--GATCGACGT------CGTCATCCCCATCCCGGAGA-GCAGCCG 565 Query 88839 ATCG-CGGCGGGCCAAGTGGCCTACGAGCTCGGCCTGCCTCTGCGCGAGGGCCTGCTCAG 88897 || |||| || ||||| || ||||| ||| ||||||||| | | | Sbjct 564 CCCGTCGGCCATGCAGCTGGCCCACCGCATCGGCAAGCCCTACCGCGAGGGCTTCGTGAA 505 Query 88898 GAACCGGTACCAGACAAGCACTCTGGCCAGGACCTTCATCATGGCCGATGCCGAGAGCCG 88957 |||||| ||| || |||| | |||||||||||| ||| || | | || | Sbjct 504 GAACCGCTACG----------TC-GGCC-GCACCTTCATCATG-CCGGGGCAGGGTGC-G 459 Query 88958 CGGACG--GGCCGTGGCGCGCAAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCC 89015 || | | | |||| || ||| ||| |||| | || | |||| || | || | Sbjct 458 CGCAAGAAGAGCGTGCGGCAGAAGCTCAACGCCATCGGGCTGGAGTTCAAGAACCGCAAC 399 Query 89016 GTGGTCGTGGTGGACGACTCTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTC 89075 ||| | ||||||||||||| |||||||||||||||| |||||| || | | | Sbjct 398 GTGCTGCTGGTGGACGACTCCATCGTGCGCGGCACCACGTCCAAGGAGATCGTGCAGATG 339 Query 89076 CTTCGCAAGTCTGGCGCCACCAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTAC 89135 || || | ||||| |||||||||||| || ||| | | || ||| | || | | Sbjct 338 GCCCGTGAGGCCGGCGCGCGCAAGGTCTACCTGGCGTCTGCCGCGCCGCCGGTGCGCTTC 279 Query 89136 CCCAACGTGTACGGCATCGACATACCGTCGGCCAAGGAGCTCATTGCTTCTGGTCGCACC 89195 ||||| || |||||||||||||| ||| | | ||||||| || || ||| ||| Sbjct 278 CCCAATGTCTACGGCATCGACATGCCGACCCGCGAGGAGCTGATCGCCCATGGCCGC--- 222 Query 89196 GAGCA-CGAGGTGGCTCTCC---TCCTCGGAGCCGACCAGGTCATCTATCAGAGTGTCGA 89251 |||| ||||| | | || | |||| |||||| | | ||||| ||| ||||| Sbjct 221 -AGCATCGAGGAGATCCGCCATTACATCGGCGCCGACGCGCTGATCTACCAGGACGTCGA 163 Query 89252 CG 89253 || Sbjct 162 CG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076948414948944