Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9002 232 1e-58 seq7891 158 2e-36 seq4113 145 1e-32 seq2780 129 9e-28 >seq9002 Length=6500712 Score = 232 bits (256), Expect = 1e-58 Identities = 205/251 (82%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || |||||||||||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 4144509 GTTAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 4144451 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-- 129 ||| || | |||||| | |||| | |||||||||||||| | | ||||||| Sbjct 4144450 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCAACCACT 4144392 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| ||||| | | ||||||||||||||||||||||||||||| Sbjct 4144391 TGGGGGTCACGTAACTAGGTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 4144332 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| Sbjct 4144331 AAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 4144272 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 4144271 ATCAATCTGTC 4144261 >seq7891 Length=16193990 Score = 158 bits (174), Expect = 2e-36 Identities = 169/220 (77%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||| | |||||||||| ||||||||| |||| || ||| ||| ||| | |||| Sbjct 14385785 CTATGAGCATCACAGATCTGTTATTGT-TCAATCTCGGGTTG-CTGAGCACCACTTGTCC 14385842 Query 106 CTCTAAGAAGCC-----AGCC--ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||| || | || || | |||| ||| | |||| | | | Sbjct 14385843 CTCTAAGAAGTTGGGGGAGGCTGACTGCTCAGGGATCATGGAACTAGTCAGCATGCCAGG 14385902 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||| |||||||||||| |||||||||||||||| |||||||| Sbjct 14385903 GTCTCATTCCTTATCAGAATTTACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGC 14385962 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||| |||||||||| Sbjct 14385963 ACCACCACCCATAGAATCAAGAAAGAGCTGTCAATCTGTC 14386002 >seq4113 Length=20621393 Score = 145 bits (160), Expect = 1e-32 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || |||||||| |||||| ||||||||||||||||| |||||||| Sbjct 17977864 CTAGTTAGCATTTCAAAGTCTCGTTTGTTATCAAAATTAACCAGACAAATCGCTCCACCA 17977923 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||| |||||||||||||||||| ||||| ||||||||||||||||| Sbjct 17977924 ACTAAGAACAGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC 17977976 >seq2780 Length=23506373 Score = 129 bits (142), Expect = 9e-28 Identities = 159/212 (75%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 14164625 GTCAGTGTAGCACATGTGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 14164567 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 || | || |||||| | |||| | ||||||||||||| | | || | Sbjct 14164566 GAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGTTGACTGCT 14164508 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 14164507 TGGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 14164448 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| |||||||| Sbjct 14164447 AAATTACTCCACCAACTAAGAACTGCCATGCA 14164416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796724870973