Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq9002 100 5e-19 seq70 93.3 7e-17 seq6224 86.0 1e-14 seq3002 77.0 5e-12 seq969 73.4 6e-11 >seq9002 Length=6500712 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 4151371 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 4151428 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 4151429 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 4151482 >seq70 Length=10360153 Score = 93.3 bits (102), Expect = 7e-17 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||||| | |||||| || ||||| | || | || |||| || || || | Sbjct 3824984 GAGAGGAACCGCAGG-TTCAGA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGG 3825041 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||| |||| |||||||| ||||||||||||| |||||||||| Sbjct 3825042 CGAAGCTACCGTCTGTGGGATTATGACTGAACGCCTCTACGTCAGAATCC 3825091 >seq6224 Length=17238262 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 10316251 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 10316193 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 10316192 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10316159 >seq3002 Length=26203571 Score = 77.0 bits (84), Expect = 5e-12 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||| | | |||||| | ||| | | || | || |||| || || || | Sbjct 18875863 AGAGGAACCACAGG-TTCAGAC-ATTTGTTGTATGTGCTTGGCTGAGGAGCCAATGGGGT 18875920 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 18875921 GAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 18875969 >seq969 Length=7321144 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 || ||||||||||||| |||||||| |||||| ||||||||||||||||| | |||| Sbjct 2576682 GCAAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCCCTCCCAG 2576739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819122758912