Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macaca_20nemestrina_20[refseq_20GCF_5F000956065.1_202015-03-19] 9,733 sequences; 2,948,703,511 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq37 212 5e-50 seq3224 107 2e-18 seq5558 95.1 1e-14 seq337 91.5 1e-13 >seq37 Length=10148950 Score = 212 bits (234), Expect = 5e-50 Identities = 606/915 (66%), Gaps = 30/915 (3%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || | ||||| || | |||||||||||||| | | Sbjct 6163941 ATGAGCCGCTGCTGAGAGAAAACCCCTGCCGTTTTGTCATCTTCCCCATCGAGTACCATG 6163882 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || ||||||||||||||||||||||| | |||||||| || Sbjct 6163881 ATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACC 6163822 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG-GTGAACA-ACATTTCATTAA 61202 |||||| ||||| ||||||| || | ||| | | | | | |||| || Sbjct 6163821 CGTCCAAGGACATTTGGCACTGGGAA--TTCCTGAAGCCCGAGGAGAGATATTTTATATC 6163764 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| ||| |||||||| || || || || || |||| || || |||| || Sbjct 6163763 CCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGCG 6163705 Query 61263 TT-TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 | | || || || || || ||| | || || || ||||||| |||||||| ||||||| Sbjct 6163704 ATGTAGC-CAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCA 6163646 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || | ||||| ||| | || || || || ||||| | || | Sbjct 6163645 TGGAAAACATACATTCTGGAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCA 6163586 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| ||||||||||| || ||||| || || ||| ||| || | Sbjct 6163585 AAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 6163526 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGC 61499 |||||||||| | ||||| | |||| | ||||| | ||| ||||| | | | Sbjct 6163525 ATTGGGCCTTGCACTGGAT--TGGGGACAAAGCAGCTACCTATGGGGAACGTGTTGTAGT 6163468 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | | || || | |||| ||| | ||||| | || || ||| | || Sbjct 6163467 CTTTGCTGCAGCGGAAGGCATCTTTT---CTGGTTATTTTGCATCGATATTCTGGCTCAA 6163411 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 |||||| ||||| ||||| || || ||||| |||||| | || | || ||||| Sbjct 6163410 GAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATTAGTGGAGATGAGGG 6163351 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || |||||||||||| || | ||||| | | ||||| | || | ||| Sbjct 6163350 TTTACACTGTGATTTTGCTTGCCTGATGTTCAATC---ACCTGGTACACAAACCATTGGA 6163294 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 |||| | | | || | || | || || || ||||||||||| || ||||| Sbjct 6163293 GGAGAGAATAAGAGAAAGAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGA 6163234 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || ||||| || ||||| || |||||||| |||||| ||| || ||||| || Sbjct 6163233 GGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTT 6163174 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAA 61856 ||| || ||| | | || || ||||| | ||| || | | | | || | || Sbjct 6163173 TGTGGCAGACAGAC--ATGCCGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAA 6163119 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 ||||||||| || ||||| | ||||| || | |||||||| || || ||||| | Sbjct 6163118 CCCATTTGACTTTATGGAGAATATTTCACT-----GAAAGACGAACTTCTTTGAGAAGAG 6163064 Query 61917 TGTAGGCGACTATCA 61931 ||| || ||||| Sbjct 6163063 AGTAAAGGAGTATCA 6163049 >seq3224 Length=21299586 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 2316033 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 2316092 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| || || ||||| || || ||| Sbjct 2316093 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATATGGGGTGCCTGTTTCTGTTTG 2316152 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 2316153 AGACTCAATGATGGCATACCAAAG 2316176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||| |||||||||||| | |||||||| || || ||| || ||||||| || || || Sbjct 2311373 CCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCATAATAAATAGTTTCAAAG 2311432 Query 65750 ATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAA 65809 || | ||| ||| | || || | ||||| | || | |||||||| |||| Sbjct 2311433 ATCTGCTTATTTAGTAATTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAAA 2311492 Query 65810 GTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 2311493 GCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 2311536 >seq5558 Length=22633747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 15341127 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 15341186 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 15341187 GTTCATTCAGAGATGTACAGTTTGCTGATAGACACTTACATCAGAGA 15341233 >seq337 Length=12475526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || || || | |||||||||||||| | | Sbjct 7493814 ATGAACCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATG 7493755 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| |||||||||||||| | |||||||| Sbjct 7493754 ATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACTGCCGAGGAGGT 7493700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397520840111120