Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4781 127 3e-27 seq702 116 6e-24 seq947 93.3 6e-17 >seq4781 Length=103474 Score = 127 bits (140), Expect = 3e-27 Identities = 176/238 (74%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 100324 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 100267 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 100266 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 100207 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC--GCGCGTG 177 ||||| |||| |||| ||| | || || ||| |||||| ||| | || | Sbjct 100206 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTG-AGCCGGTGCAGG 100148 Query 178 CGGCCCAGAACATCT--AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||| | |||||||||||||||||||||| ||||| || ||||| Sbjct 100147 TAGCCCCGGACATCTTAAGGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 100091 >seq702 Length=116768492 Score = 116 bits (128), Expect = 6e-24 Identities = 167/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| | |||||| || | |||||||| ||||| || ||||||||| || | Sbjct 59526198 GTACAAAACGTAGGGACTTAAT----GCGAGCTT-ATGACCTGCATTTACTAGGAGTT-C 59526145 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC-GATGAAATTTCAAA-GAT 118 || ||| | || || ||||||||| | ||||| || | || | ||||| | | Sbjct 59526144 CTTGTTCATGAG-AATAATTGCAATCCCCAATCCCTATTAGTGAATCAGGTTCAATCGGT 59526086 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 59526085 TACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGC 59526026 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 59526025 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 59525980 >seq947 Length=108171978 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 102456742 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 102456684 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 102456683 AATCTCGGGTGGC 102456671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751944065770