Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq702 140 1e-30 seq4781 122 4e-25 seq233 96.9 1e-17 seq4110 89.7 2e-15 seq4347 82.4 3e-13 >seq702 Length=116768492 Score = 140 bits (154), Expect = 1e-30 Identities = 98/112 (88%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 19615049 CCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGT 19615108 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 19615109 CCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 19615160 >seq4781 Length=103474 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 103309 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 103368 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 103369 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 103428 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 103429 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 103468 >seq233 Length=141296404 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | || |||| ||||||||||||||||||||||| | |||| ||||||||| Sbjct 45640271 GAGCACATGTGCTGGGGCCCGAAAGATGGTGAACTATGCCCAGACAGGGCAAAGCCAGAG 45640212 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAAT 655 |||| || |||||||| ||||| ||| ||| |||||||| Sbjct 45640211 GAAATTCCGGTGGAGGTCCGCAGTGGTCCTGATGTGCAAAT 45640171 >seq4110 Length=12211143 Score = 89.7 bits (98), Expect = 2e-15 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||| |||||||| || |||||| |||| || | |||||||||||||||||| Sbjct 9950023 GGACCCGAAGGATGGTGAGCTCTGCCTGGGCAGGGCGATAC-AGAGGAAACTCTGGTGGA 9950081 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || |||| ||| ||| |||||||| || || ||||||| |||||| Sbjct 9950082 GGTCTGCAGTGGTCCTGATGTGCAAATTTGTCCTCTGATTTGGGCATAGGG 9950132 >seq4347 Length=47401472 Score = 82.4 bits (90), Expect = 3e-13 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||| | ||| |||||| | |||||| ||||| |||||||| Sbjct 9132058 TGTTAGGACCCGAAAGATGGAGTGCTAGGCCTGAGCTGTGTGAAGACAGAGAAAACTCTG 9132117 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||| | ||| | || ||||||||| || | || ||||||||||||| Sbjct 9132118 GTGTAGGGCTGTAGCAATCCTAAAGTGCAAATCAGTCCGCTAACCTGGGTATAGGGGC 9132175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079835306900