Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2919 167 4e-39 seq4781 141 1e-31 seq2497 122 1e-25 seq947 118 2e-24 seq702 114 2e-23 seq3188 98.7 2e-18 >seq2919 Length=60697988 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 36794068 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 36794127 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 36794128 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 36794184 >seq4781 Length=103474 Score = 141 bits (156), Expect = 1e-31 Identities = 183/242 (76%), Gaps = 23/242 (10%) Strand=Plus/Minus Query 35 GCCCAGAACATCTAA--GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGG 92 |||| | |||||| | ||||||||||||||||||||||| |||| || | |||||| Sbjct 100145 GCCCCGGACATCTTAAGGGGCATCACAGACCTGTTATTGC-TCAATCT-CGGGTGGCTGA 100088 Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-TAGTCGATGGGG---CTAT 145 | |||| | |||||||||||||| | | || ||| | | | | | | ||| Sbjct 100087 ACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAG 100028 Query 146 TTAGCAGGTTAAGGTC-------TCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCC 197 |||||| | |||| |||||||| |||||||| | |||||||||| |||| Sbjct 100027 TTAGCATGCAGAGGTTCTTATTTTCGTTCGT-ATCGGAATAA--CAGACAAATCCGCTCC 99971 Query 198 ACCAACTAAGAACGGCCATGCACCACC-ACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct 99970 ACCAACTAAGAACGGCCATGCACCACCTACCCCACGAATCGAGAAAGAGCTATCAATCTG 99911 Query 257 TC 258 || Sbjct 99910 TC 99909 >seq2497 Length=93316391 Score = 122 bits (134), Expect = 1e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||| ||||| ||||||| ||||||||||||||||||||||||||| ||||| Sbjct 45501081 GTCTTGTTCATTATCAGAATTAATCAGACAAATCACTCCACCAACTAAGAATACCCATGT 45501140 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| |||| |||| ||||||| ||||||||||||| Sbjct 45501141 ACCACCATCCATGGAATGGAGAAAGAACTATCAATCTGTC 45501180 >seq947 Length=108171978 Score = 118 bits (130), Expect = 2e-24 Identities = 93/109 (85%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 102456743 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 102456685 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC 123 ||| | || |||||| | |||| | |||||||||||||| || ||| Sbjct 102456684 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTAGGCAC 102456637 >seq702 Length=116768492 Score = 114 bits (126), Expect = 2e-23 Identities = 141/187 (75%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 59526044 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 59525986 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-- 132 ||| | || ||| || | |||| | ||||||||||| || | || ||| | Sbjct 59525985 CAATC-TCGGGTGGGTGAATGCCACTTGTCCCTCTAAGCAGTTGGGGGACACCCACGGCT 59525927 Query 133 TCGATGGGGC-TATTTA--GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| | ||| || || ||| | || ||| ||| | ||| || ||||||||||||| Sbjct 59525926 TCGTGGTGGCGTAACTAGTGCATGCTAGAATCTTGTTAGATATTGGGATTAACCAGACAA 59525867 Query 190 ATCACTC 196 ||| ||| Sbjct 59525866 ATCCCTC 59525860 >seq3188 Length=83067054 Score = 98.7 bits (108), Expect = 2e-18 Identities = 82/100 (82%), Gaps = 8/100 (8%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| ||||| ||| ||| ||||||| ||| |||||| ||| |||||||| Sbjct 63810882 GTCTCGTTTGTTATTGGAGTTA----GACAAATAACTACACCAA----GAATGGCCATGC 63810933 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| ||||| |||||||||||| |||||||| Sbjct 63810934 ATCACCACCCATGGAATCCAGAAAGAGCTATTAATCTGTC 63810973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796740733518