Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2763 324 2e-86 seq5385 190 3e-46 seq2497 141 2e-31 seq946 82.4 1e-13 seq3757 77.0 6e-12 seq1989 77.0 6e-12 >seq2763 Length=65901067 Score = 324 bits (358), Expect = 2e-86 Identities = 223/252 (88%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 65010971 GTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 65011030 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 65011031 ACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAT 65011090 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 65011091 CAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACT 65011150 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| |||||| || | ||| | || | |||||||| ||||| | |||||| Sbjct 65011151 TTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCA 65011210 Query 282 TGGTTTGTATTC 293 ||| ||||||| Sbjct 65011211 CGGTCTGTATTC 65011222 >seq5385 Length=6086 Score = 190 bits (210), Expect = 3e-46 Identities = 161/186 (87%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 ||||||||||| || ||| ||||| ||||||||| |||| ||| ||| ||||||||| Sbjct 4293 AACCTGTCTCACGAGCGTCGAAACC-AGCTCACGT-CCCT-TTA-TGG---AACAATCCA 4345 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 4346 ACGCTTG--GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 4403 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG-TTATCCCTGTGGTAACTTTTCTGG 228 ||||||||||||||||| || | |||||||||| |||||||||||||||| |||||| Sbjct 4404 GACGTCGCTATGAACGCT--GCAG-CACAAGCCAGTTTATCCCTGTGGTAAC-TTTCTGA 4459 Query 229 CACCTC 234 |||||| Sbjct 4460 CACCTC 4465 >seq2497 Length=93316391 Score = 141 bits (156), Expect = 2e-31 Identities = 92/101 (91%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| | Sbjct 14170379 ATGATAGGAAGAGCCAACACTGAAGGATCAAAAAGCAATGTCACTATGAACGCTTGGCAG 14170320 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 || |||||||||||||||||||||||||||||| |||||| Sbjct 14170319 CCGTAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 14170279 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| ||||||||| ||||| ||| | | |||| ||||||||||||| | || Sbjct 65732225 TCATTAGTAGAGTAAAACTATCCTGTATCACAATTGCCTAATCCCAGCTCACGTT-CTTA 65732283 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| ||||| ||||||||| || ||| |||||||| Sbjct 65732284 TTATTGGGTTCACAATCCAATATTTGGTGAAGTCTGCTTC 65732323 >seq946 Length=123392446 Score = 82.4 bits (90), Expect = 1e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 |||| |||||||| ||||||| |||||||||||||||||||||||||| |||||| Sbjct 19839182 ACCTATCTCATGATGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGCGAACAA 19839236 >seq3757 Length=33087545 Score = 77.0 bits (84), Expect = 6e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||||| || | ||||||| |||||| |||||||| ||||| |||||||| || Sbjct 26865207 TCAAAAAGCAATGTTGTTATGAACACTTGGCCACCACAAGCTGGTTATTCCTGTGGTGAC 26865148 Query 221 TTTTCTG 227 ||||||| Sbjct 26865147 TTTTCTG 26865141 >seq1989 Length=108143057 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG 251 |||||||||||||||||||||||||| ||||||||| |||||| || | ||| | Sbjct 65003684 TGCCACAAGCCAGTTATCCCTGTGGTGACTTTTCTGACACCTCCTGCTTGAAACCCAAAA 65003625 Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 || | |||||||| ||||| ||||||| ||| Sbjct 65003624 GGTCAGAAGGATCGTGAGGCC-TACTTTCACGGT 65003592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854334399168