Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq702 403 6e-110 seq2497 266 1e-68 seq947 242 1e-61 seq520 181 3e-43 seq946 176 1e-41 seq3398 167 8e-39 seq2763 113 1e-22 seq1789 104 8e-20 seq1231 78.8 3e-12 seq2621 75.2 4e-11 >seq702 Length=116768492 Score = 403 bits (446), Expect = 6e-110 Identities = 273/301 (91%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 235 GGCT-CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 |||| ||||| | |||||||||||||| ||| ||||| | | ||||||||||||||| Sbjct 91975777 GGCTGCCCACCT-TTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCT 91975835 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91975836 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 91975895 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 91975896 TGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAG 91975955 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||||||||||||||||||||||||||||||||| ||||||| || | |||| ||| |||| Sbjct 91975956 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCACAGTTACTTCCACTGTTT-CCCTCGCT 91976014 Query 474 TGGTTGAATTTCTTCA-CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 | |||| |||||||| ||||||||||||||||||| | |||||||||||||| ||||| Sbjct 91976015 TCATTGAGTTTCTTCAGTTTTGACATTCAGAGCACTGAGTAGAAATCACATTGCTTCAAC 91976074 Query 533 A 533 | Sbjct 91976075 A 91976075 >seq2497 Length=93316391 Score = 266 bits (294), Expect = 1e-68 Identities = 158/165 (96%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 14169167 GACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 14169108 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 14169107 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTC 14169048 Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 14169047 ACTTTGACATTCAGAGCACTGGGCAGAAAAAACATTGCATGAACA 14169003 Score = 183 bits (202), Expect = 1e-43 Identities = 125/140 (89%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 14169930 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 14169871 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | Sbjct 14169870 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGATTTCCCTGG 14169811 Query 357 ATAGTAGATAGGGACAGTGG 376 | ||||||||||| |||| Sbjct 14169810 A---TAGATAGGGACGGTGG 14169794 >seq947 Length=108171978 Score = 242 bits (268), Expect = 1e-61 Identities = 154/167 (92%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||||||||| | |||||| ||| || ||||||||||||| | |||||||||| Sbjct 50730587 GACAGTGGGAATCTCACTCTTCCATTAATGTGCATCACTAATTAGATCAGGAGGCATTTG 50730528 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 50730527 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTC 50730468 Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 50730467 ACTTTGACATTCAGAGCACTGGGCAGAAATTACATTGCATCAACATC 50730421 >seq520 Length=73916538 Score = 181 bits (200), Expect = 3e-43 Identities = 216/297 (73%), Gaps = 21/297 (7%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 || |||||||| || |||| ||| ||| |||||| | | |||||||||||| ||||| Sbjct 9991041 TCTCACTTATTGTATACCTTTCAGGTCTGTTCACAGTGCCAGACTAGAGTCAAAGTCAAC 9991100 Query 298 AGGGTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||| |||| ||| || | || || |||||| || ||||| || | Sbjct 9991101 AGTGTCTTCTTTCATTAGCTGTTTCTGCTATATCCATTTCCTTGGGTGAAGTTTCACTGG 9991160 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| ||||| |||||||||||| | | ||||||| |||| |||||||| || ||| Sbjct 9991161 ATAGTAAGTAGGGGCAGTGGGAATCTTGGTCATCCATTTATGCATGTCACTAACTAAATG 9991220 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||| | ||||||| ||| || |||||| | |||| Sbjct 9991221 --------------------AAGAGACTTATAGTTATTCCTCCCATTTACCTGAGCTTCA 9991260 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| ||| ||||| |||||||||||||| ||| ||||||||||| ||| |||||| Sbjct 9991261 CTGATTTTTTTCACATTGACATTCAGAGCGCTGTGCAGAAATCACCTTGTATCAACA 9991317 >seq946 Length=123392446 Score = 176 bits (194), Expect = 1e-41 Identities = 188/246 (76%), Gaps = 13/246 (5%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||| ||||||||||||||| | ||| || |||||||| || |||||||| || Sbjct 92787648 CAAGCTCAATAGGGTCTTCTTTCCCTGTTGACGCCTCCAAGCCCATTGCCTTGGCTCGGG 92787589 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||| || ||| | || | | || |||||||||| ||| ||| ||||| | || ||||| Sbjct 92787588 TTTCCCTGGATGGGAGGGA-GAACGGTGGGAATCTTGTTCATCTATTCAAGTGCATCACT 92787530 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||| ||| ||||||||| ||||||||| ||| |||||| | ||||||| Sbjct 92787529 AATTACTTGATGAGGCATTT----------AGAGAGTCACAGTCACTCCCACTGTTTACC 92787480 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 | | ||||||||||| |||||||| |||||||| || ||||||||||| | | Sbjct 92787479 TAATC-TCATTGAATTTCTTTACTTTGAC-TTCAGAGCTCTAGGCAGAAATCAAGTCATG 92787422 Query 528 TCAACA 533 |||||| Sbjct 92787421 TCAACA 92787416 >seq3398 Length=72247402 Score = 167 bits (184), Expect = 8e-39 Identities = 202/271 (75%), Gaps = 3/271 (1%) Strand=Plus/Plus Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 ||||||||| |||| |||| | | | | || | ||| || |||||||||||||| Sbjct 7796715 ACACCTCTCTGGTCACCTCACCGTGCCAGGTCACAGCCGAGCCCAGCAGGGTCTTCTTTC 7796774 Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 || |||||| | || || | || |||||||||||| ||| ||| || ||||| Sbjct 7796775 CCT-CTGATTGGGTCACAGCCATCCCGGTGGCTGTGGTTTTGCTGGATCCCAGGCAGGGA 7796833 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 | ||||||||||| || || |||| |||| ||| |||| ||||||| ||||||||||| Sbjct 7796834 CGGTGGGAATCTCCTTCATGCATTTGTGCGTGTCTGTAATGAGATGACCAGGCATTTGGC 7796893 Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG-GTTGAATTTCTTCA 489 || | |||||||||| | ||||| ||| | || |||| | ||||| |||||||| Sbjct 7796894 TA-CGTAAGAGAGTCTCGGCCACTCCAGCCCGTGCCCTGCGCCCGTGTTGAGTTTCTTCA 7796952 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | |||||||| |||| ||| |||||||||| Sbjct 7796953 CGCTGACATTCGGAGCTCTGTGCAGAAATCA 7796983 >seq2763 Length=65901067 Score = 113 bits (124), Expect = 1e-22 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 65011256 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 65011315 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 65011316 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCA 65011357 >seq1789 Length=108226025 Score = 104 bits (114), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 15/182 (8%) Strand=Plus/Plus Query 347 GTTTCGCTAGATAGTAGA---TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||| || ||||||||| | |||||||||||||||| || || || ||| | || Sbjct 42753162 GTTTTACTGGATAGTAGAGCGTGGGGACAGTGGGAATCTTATTCATTTATCAATGGGTGT 42753221 Query 404 CA----CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 | ||| |||||||| | |||| || |||||| |||||||||||||||| Sbjct 42753222 TAGTTACTATTTAGATGATGGAGCATCTGTATACCTT--GAGAGTCATAGTTACTATG-- 42753277 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT-GACATTCAGAGCACTGGGCAGAAAT 518 |||| | | ||| || ||||||||||||| || ||||||||||||||||||||| Sbjct 42753278 ---TTACTCTCACTTCATTATATTTCTTCACTTTTGATGTTCAGAGCACTGGGCAGAAAT 42753334 Query 519 CA 520 || Sbjct 42753335 CA 42753336 >seq1231 Length=116334831 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 60094632 TTTTTCACTTTGACATTCAGAGCACTGGGTAGAAATCACATCGCGTCAACA 60094582 >seq2621 Length=77693121 Score = 75.2 bits (82), Expect = 4e-11 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||||||||| |||||||||||||| | ||| |||||| ||||| | | |||| || | Sbjct 28847045 TTAGATGACAAGGCATTTGGCTACTATGAGACAGTCATGGTTACACTC-AAGTTTTCCTG 28847103 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||| ||||||||||||||| |||||||||| | || | || |||| Sbjct 28847104 GGCTTCCACAGATTTCTTCACTTTGA-ATTCAGAGCAATAGG-AAAACTCAC 28847153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635074449344