Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3640 284 1e-71 seq702 102 6e-17 seq1231 98.7 8e-16 >seq3640 Length=31815103 Score = 284 bits (314), Expect = 1e-71 Identities = 597/876 (68%), Gaps = 23/876 (3%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || || ||||| || | |||||||||| ||||| || || || || |||||||| ||| Sbjct 24468872 TTTCCTATCGAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGG 24468813 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC-- 61182 |||| ||||||| ||| | ||||| ||||| | ||||||| || | | ||| Sbjct 24468812 ACGGCCAAGGAGGTGGATCTTTCCAAGGACATTCAGCACTGGGAAGCTCTGA---AGCCT 24468756 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | ||| || ||||||| ||||| |||| |||||||| ||| || || || || Sbjct 24468755 GATGAGAAATATTTCATATCGCATGTTCTGGCTTTCTTTGCAGCTAGTGATGGCATAGTA 24468696 Query 61243 AATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 ||||| || || |||| || ||| || || || || || | | ||||| || ||||| Sbjct 24468695 AATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTTCAGATTACAGAGGCTCGCTGTTT 24468637 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 ||| |||||||| ||||||||||| || | || || || ||||| ||| | ||||| || Sbjct 24468636 CTATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTCCTCATTGA 24468577 Query 61362 TACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 ||| ||||| | || ||| | ||| | ||||||||||| | ||||| || Sbjct 24468576 TACTTACATTAAAGATTCCAAAGAAAGGGAATATCTCTTCAATGCCATTTAAACGATGCC 24468517 Query 61422 GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACA 61479 || ||| ||| || ||||||||||| || ||| | |||| |||||| Sbjct 24468516 TTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTAGAT--TGGGGACAAAGAGGCTACC 24468459 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 | ||| ||||| | | || ||||| | || || || | || || ||| || ||| Sbjct 24468458 TATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT 24468399 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-A 61598 || |||| || ||| | |||||||| ||||| ||||| || || || || ||||| | Sbjct 24468398 GCATCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAA 24468339 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 || || || | || ||||| | || ||||| ||||| || | ||||||| | Sbjct 24468338 CTTATTAGCA-GAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---A 24468283 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 ||||| || ||||||||| || | || || || || | || || | || Sbjct 24468282 CCTGGTACATAAACCGTCGGAGCAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGAT 24468223 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 | |||| || || |||||||| ||||| || ||||| || |||||||| | Sbjct 24468222 ACAGGAGGAGTTCCTCACTGACGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATGTT 24468163 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG---TATGAA 61835 |||| |||||| ||||||||||| || ||| | || || | || |||| || || Sbjct 24468162 AATGAAGCAGTACATTGAATTTGTGGCTGACAGACTTATGCTGGAACTGGGTTTTAGCAA 24468103 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | | || | | || |||| |||||||| || ||||| | ||| | ||||| || || Sbjct 24468102 GGTGTTC-AGAGTA--GAAAATCCATTTGACTTTATGGAGAATATTGCACTGGAAGGAAA 24468046 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| || || || ||||| | |||||||| ||||| Sbjct 24468045 GACTAACTTCTTTGAGAAGAGAGTAGGCGAATATCA 24468010 >seq702 Length=116768492 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || ||||| ||||| || || ||||| ||||| |||| ||||| || Sbjct 56452571 GGTATATTCCACTATTTCTGTGCATAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 56452630 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | |||||| || | |||||| || || || ||||| || Sbjct 56452631 GTTGCTCTTCCGATTACAGGAATCCTTATAGAGCATGTATGGGGTTCCTGTCTCTGTCTG 56452690 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 56452691 AGACTCAATGATGGCATACCAAAG 56452714 >seq1231 Length=116334831 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | ||||| ||||||||||| ||||| || ||| ||| |||||| Sbjct 53059555 CAGGAGGTACAGGTTCCAGAGGCTCGTTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 53059496 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 53059495 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 53059449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397530797325920